Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3778 ATGAAACTGAAAGCTGGTGTTCAAAACCATTTTGTCCAAATCCAAAAGCTTATTTTTTGTTCTAGTGGAAGTACAATACACGTTTTGTTCTCCAATAATGAAAAACAGAATCTTGAGTCTTCTTGGGAAAAGCCATTCCAAGTCTACATGAATCCGGAATGCAAAATTGGTAGTGGTGATAAGAGCAAAATGAATGTTAGAAACCTCACATTTGGAAAATTTAAGGTTTTCCCAGAAAATCTTGAGCCATGGAAGAAGAGGATTCTTGATCCTGGTAGTGATGTCTATTTGGAGTGGAACAGAGCTTTCCTATGTTCTTGCATGCTAGCTTTGTTTGTTGATCCCCTGTTTTTCTACCTCCCCTCAGTAGCAAATAATGGGAATTCTACATGTATGGCTACTGATTTGAACATAGGAATTGTTGTGACATGTTTCAGAACATTTGCTGATGTTTTCTACCTGCTGAACATGGTGATCAAGTTCAGGACTGCCTATGTGGCACCAAGTTCAAGGGTTTTTGGGAGGGGAGAGCTTGTTATGGATCCAAAGTTGATTGCTACAAGGTATTTGAGATCAGAGTTCTTCTTAGATCTTGTAGCTACACTGCCTCTTCCTCAGATGGTGATTTGGTTTATCATGCCAGCAATTAGAAGAAGCTCCCATGCTGATCATACCAACAATGCTCTTGTACTCATTGTTCTGCTTCAATATGTCCCCAGATTATATTTGACTTTCCCATTAAGTTCTCAGATTATTAAAGCAACTGGTGTAGTTACAAAGACAGCTTGGGCTGGAGCTGCTTACAATCTCTTACTTTACATGTTGGCTAGTCATGTCTTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGCATGCTAGTTGCTGGAAATCTGAATGCAGAAATGAAAGGCTACCAGTAAAATGTGTCCTTCAGTACTTGGATTGCAGTACTTTAGATCATGGTGATCGCATGAAGTGGGCAAATACCACTTCTGTGTTTGGTAACTGCAATCCAGAAAATAGCACAAATTTCAACTATGGAGTCTTTGCCAATGCAATACAAAATAATGTTATCTCCTCCACATTTACTGAGAAGTACCTCTATTGTCTGTGGTGGGGCTTGCAGAATTTGAGTTCTTATGGCCAGGGTTTGACTCCAAGCACATTCGTTTGGGAAACTGCATTTGCAATACTCATAGCTATTCTGGGCCTGGTATTGTTTGCCCACTTAATTGGCAACATGCAGACATATTTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGACTGAAGCGACGTGACACTGAAGAGTGGATGAGCCATCGGCAGCTCCCACCACATCTCAGAGAGCGTGTGAGGAGATTTGTTCAGTACAAGTGGCTTGCAACTCGTGGGGTTGATGAAGAAACCATCGTAAGAGGCCTTCCTCTAGATCTCAGAAGAGACATCCAACGTCACCTTTGCTTAGACCTTGTGAGACGTGTTCCCTTCTTTTCCCAAATGGATGCTCAGCTACTTGATGCAATATGTGAGAGATTGGTATCATCCTTGAGTACTCAAGGCACATACATAGTCAGAGAAGGAGATCCAGCTACAGAGATGCTTTTTATCATTAGAGGGAAACTTGAAAGCTCAACTACAAATGGAGGTAGAACTGGTTTCTTCAACTCAATTACCTTAAGACCTGGTGATTTCTGTGGAGAAGAGCTACTAGCTTGGGCATTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACAAGAACAGTTAAAGCCCTTGTAGAAGTGGAAGCCTTTGCATTAAGAGCAGAAGATCTTAAATTTGTGGCCAACCAGTTTCGACGTCTCCACAGCAAGAAATTGCAGCATACCTTCCGTTTCTACTCTCATCATTGGAGGACATGGGCTTCTTGCTTCATTCAAGCTGCATGGCGCCGGTACAAGAAGAGAGTGTTGGCGAAAACTCTTAGCCGGAGGGAATCCCAGTATTTCATTGATGGTGAACAAGTAAGGGAAGAAGAGCATAGTGTTGTGAGTTCAAACACTGCGCAAGTAAAACAGAACCTTGGTGTTACTATACTGGCTTCAAGATTTGCTGCTAACACAAGAAAAGGGGTTCAGAAGATCAAGGATGTGGGGATGCCTAAGTTGCAAAAGCCTGAAGAGCCAGACTTCTCAGTAGAGCATGATGATGACTGA 2202 0.4205 MKLKAGVQNHFVQIQKLIFCSSGSTIHVLFSNNEKQNLESSWEKPFQVYMNPECKIGSGDKSKMNVRNLTFGKFKVFPENLEPWKKRILDPGSDVYLEWNRAFLCSCMLALFVDPLFFYLPSVANNGNSTCMATDLNIGIVVTCFRTFADVFYLLNMVIKFRTAYVAPSSRVFGRGELVMDPKLIATRYLRSEFFLDLVATLPLPQMVIWFIMPAIRRSSHADHTNNALVLIVLLQYVPRLYLTFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHASCWKSECRNERLPVKCVLQYLDCSTLDHGDRMKWANTTSVFGNCNPENSTNFNYGVFANAIQNNVISSTFTEKYLYCLWWGLQNLSSYGQGLTPSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPPHLRERVRRFVQYKWLATRGVDEETIVRGLPLDLRRDIQRHLCLDLVRRVPFFSQMDAQLLDAICERLVSSLSTQGTYIVREGDPATEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWASCFIQAAWRRYKKRVLAKTLSRRESQYFIDGEQVREEEHSVVSSNTAQVKQNLGVTILASRFAANTRKGVQKIKDVGMPKLQKPEEPDFSVEHDDD* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3778 733 Gene3D - 116 424 - -
Lja1g3778 733 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 525 541 IPR018488 -
Lja1g3778 733 Pfam Cyclic nucleotide-binding domain 521 609 IPR000595 -
Lja1g3778 733 ProSiteProfiles cAMP/cGMP binding motif profile. 498 581 IPR000595 -
Lja1g3778 733 PRINTS EAG/ELK/ERG potassium channel family signature 367 384 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3778 733 PRINTS EAG/ELK/ERG potassium channel family signature 393 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3778 733 PRINTS EAG/ELK/ERG potassium channel family signature 157 166 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3778 733 PRINTS EAG/ELK/ERG potassium channel family signature 411 420 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3778 733 PRINTS EAG/ELK/ERG potassium channel family signature 461 468 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3778 733 SUPERFAMILY Voltage-gated potassium channels 91 420 - -
Lja1g3778 733 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 49 729 - -
Lja1g3778 733 MobiDBLite consensus disorder prediction 711 733 - -
Lja1g3778 733 CDD CAP_ED 498 629 IPR000595 -
Lja1g3778 733 SMART cnmp_10 498 629 IPR000595 -
Lja1g3778 733 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 49 729 - -
Lja1g3778 733 SUPERFAMILY cAMP-binding domain-like 428 620 IPR018490 -
Lja1g3778 733 Pfam Ion transport protein 99 425 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g3778 733 Gene3D Helix hairpin bin 426 489 - -
Lja1g3778 733 Gene3D Jelly Rolls 496 616 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3778 Lja-Chr1 47417797 47424488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3778 30 729 Ion Channels AT2G24610 69.177 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3778 K05391 - gmx:100803334 1233.78