Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3774 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAACAACAAGCCCTCATGCAGCAAGCTTTGCTTCAGCAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCCATGTCTCAGATGGAGCCCGTTCCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTTCTTCTTGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTTACCGATAAGCTTCTCGCAGAAGTTTTTCAGAGTGCTGGCCCTCTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCCATAATGACATTGCATGGACGACAACTATATGGGCAAGCACTTAAGGTCAATTGGGCATATGCCAATAGCAGTAGGGAGGATACCTCAGGTCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTTCGTGATCATCAGGATGCTCAAAGTTCCATAAATGATATGACGGGTAAATGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTGGAAGCTCTAGTGAAGAGAAGAACAGTGACAATCAAAATGCTGTCGTGCTTACTAATGGATCTTCAGATGGAGGTCAGGATAATAACAATGAGGAGGCTCCTGAAAACAATCCTTCATATACCACAGTTTATGTCGGCAACCTTCCCCATGATGTAACGCAAGCTGAACTCCATTGTCAGTTCCATGCACTGGGGGCTGGGGTGATTGAGGAGGTCCGAATTCAGCGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGGTGGCTAATGGCAGAATAGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAGACCAACTCCTCCGGGAACTGCTTCAAACCCACTACCTCCTCCTGCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAGGGCTATTCTCCTGCCGAGTTGTTGGCCTATCAGCGCCAATTGGCCCTGAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTTCTGCAAATGACCGGCCAACACGGCCTAGCCCCCGCTTCAATGGGCATCAACACCGGGGCATCTCAAGCCATGTATGATGGATATGCTGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA 1314 0.4726 MQQRLKLQQQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDASSCRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSSINDMTGKWLGNRQIRCNWATKGAGGSSSEEKNSDNQNAVVLTNGSSDGGQDNNNEEAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRIQRDKGFGFVRYNTHEEAALAIQVANGRIVRGKTMKCSWGSRPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINTGASQAMYDGYAGNSSRQQLMYYR* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3774 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 10 434 - -
Lja1g3774 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Lja1g3774 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 338 IPR000504 GO:0003723
Lja1g3774 437 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 10 434 - -
Lja1g3774 437 Gene3D - 1 140 IPR012677 -
Lja1g3774 437 Gene3D - 141 221 IPR012677 -
Lja1g3774 437 CDD RRM3_TIA1_like 264 337 - -
Lja1g3774 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 332 IPR000504 GO:0003723
Lja1g3774 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Lja1g3774 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Lja1g3774 437 Gene3D - 242 342 IPR012677 -
Lja1g3774 437 SUPERFAMILY RNA-binding domain, RBD 56 220 IPR035979 GO:0003676
Lja1g3774 437 SUPERFAMILY RNA-binding domain, RBD 250 342 IPR035979 GO:0003676
Lja1g3774 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Lja1g3774 437 CDD RRM2_PUB1 143 217 - -
Lja1g3774 437 MobiDBLite consensus disorder prediction 219 264 - -
Lja1g3774 437 SMART rrm1_1 265 334 IPR000504 GO:0003723
Lja1g3774 437 SMART rrm1_1 143 216 IPR000504 GO:0003723
Lja1g3774 437 SMART rrm1_1 58 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3774 Lja-Chr1 47390602 47398505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3774 58 338 Eukaryotic Initiation Factors Gene Family AT2G23350 29.795 5.93e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3774 K13201 - gmx:100777108 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3774 1 47390602 47398505 Lja1g3774 1 47390602 47398505 ECH