Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3770 ATGTCTCATAAAACAGAACACTTCTTGTTTCTTATCATACTCTTCATGATAGCCACTTGTTTTGCACCATCCCATGCTGACACAGATGCACAAGTTCTGTTGAACTTCAAAAGCTTCTTGTCCAATGCAGATGATGCTTTAAACAACTGGGTGGAAAATTCTATCAGCGTGTGCAGTTGGAGTGGTATAATATGTGTCAATCAAAAACTTCATGGTTTGAAGCTAGAGAACATGGGATTAGGTGGCACAATTAGAGTAGACATTCTTAAACAGTTGTCCACCTTGAATACTTTTAGTGTCATGAACAATAGATTTGAGGGTCCATTTCCTGAATTCAAAGAGATTTTGACTTTAAGGGGATTGTTTCTTAGCAATAACAAGTTCTCTGGTGAAATTCCTGACGATGCTTTTCAAGGCATGAGAGGGTTGAAGAGAGTGTTCTTGGCAGAAAATAAGTTCACAGGTGAAATTCCTAAGTCCCTTGCTCAATTGCCTAGGCTTTTGGATGCGGACTTGCATGGAAATGGTTTTCAAGGTAACATACCGGAGTTTCAGCAGAGAGATTTCAGAGTGTTTGATTTATCTAACAACCAATTGGAGGGTCCTATTCCAGAAAGCTTAAGCAACGTGGGTCCAAATGCATTTGCAGGAAATCAAGGTCTATGTGGAAAACCTGTAAGCAACCCCTGCAGCAGTAGCAGCACCCCACCATCCTCTGGTCAAAACCCACCGTCAGATCAAAAACATGAAAACAAGAAGCACCACCATCTTCTTATCACTATCATTGTTGTGGTGATTGTGTTTGTCCTGGCTTTAATTCTAGCCCTCTTGTTCCTTCGTTACCGTCGGAGCCAAACTGCAGATGAAAAACCAGTGTTGATCCACCATGCACAACCCTTGCAACAGTCCCAGAACACCAGTACAGTTTCCATTGAGATCAAAGACACAGCAGGTGAAGCATCCATGAAGATTGAAGATGGAGACTTGAACTTCGTTACCAACGATAGGGAGGCGTTTGATTTGCAAGACTTGCTCAGGGCCTCTGCTGAGGTTCTGGGCAGTGGCAGTTTTGGATCCACCTACAAGGCCATGGTTGTGAGTGGACCTGTTGTGGTGGTGAAGAGGTTTAAGCACATGAATGTTGTTAAGAAGAAAGAGTTCTCTGAGCACATGAAAAGGCTTGGAAGGTTGTCACATCCCAATCTGCTACCTCTTGTTGCATTCTACTATGGAAAAGAAGAGAAGCTTCTGGTTCAAGACTTTGTTGAAAATGGCAGCTTGGCTAGTCATCTTCATGGCAGGGGAGGTAGTGAATTGAACTGGCCAACTCGTTTGAAGATCATTAAAGGAGTAGCAAGGGGTTTAGCTTATCTTTACAGAGAGTTTCCTGATCAAAAGACACCACATGGTCATCTAAAATCGTCCAATGTTTTGCTAGACCATAAATTTGAGCCTCGTTTGACAGAGTATGGACTTGGGGCAGTGGTGGAGAAGAAGCATGCTCAGCAGTTCATGGCAGCAAACAAGTCCCCAGAGAAGGAGGGGCCAGGTGAGAAGAGTGACGTGTGGTGCTTAGGGATCCTGATACTGGAGGTTCTGACAGGGAAGTTCCCAGCAAACTATGTGAGGCATGGGAAGGAAGGGAGTGAGGAATTGGCATTGTGGGTGGAGTCAATGGTGAGGGAAGGGTGGAATGCAGGGGAGGTGTTGGATAAGAGCATAATTTCAAATGGGGATGGTGGTGAGATGGTGAAGCTGTTGAGGATTGGGATGAGTTGTTGTGAGTGGAGTGTGGAGAGTAGGTGGGATTGGAAGGAGGCAGTGGCCAAGATTGAGGAGTTGAAGGAGAAGGATTATCAAGAAGATGGAAGTGAATTTGAAAGTGAAAGGGATCAATATTTGTCCTCATCCATTGATTCAGGGATATGA 1929 0.4417 MSHKTEHFLFLIILFMIATCFAPSHADTDAQVLLNFKSFLSNADDALNNWVENSISVCSWSGIICVNQKLHGLKLENMGLGGTIRVDILKQLSTLNTFSVMNNRFEGPFPEFKEILTLRGLFLSNNKFSGEIPDDAFQGMRGLKRVFLAENKFTGEIPKSLAQLPRLLDADLHGNGFQGNIPEFQQRDFRVFDLSNNQLEGPIPESLSNVGPNAFAGNQGLCGKPVSNPCSSSSTPPSSGQNPPSDQKHENKKHHHLLITIIVVVIVFVLALILALLFLRYRRSQTADEKPVLIHHAQPLQQSQNTSTVSIEIKDTAGEASMKIEDGDLNFVTNDREAFDLQDLLRASAEVLGSGSFGSTYKAMVVSGPVVVVKRFKHMNVVKKKEFSEHMKRLGRLSHPNLLPLVAFYYGKEEKLLVQDFVENGSLASHLHGRGGSELNWPTRLKIIKGVARGLAYLYREFPDQKTPHGHLKSSNVLLDHKFEPRLTEYGLGAVVEKKHAQQFMAANKSPEKEGPGEKSDVWCLGILILEVLTGKFPANYVRHGKEGSEELALWVESMVREGWNAGEVLDKSIISNGDGGEMVKLLRIGMSCCEWSVESRWDWKEAVAKIEELKEKDYQEDGSEFESERDQYLSSSIDSGI* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3770 642 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 623 - -
Lja1g3770 642 ProSiteProfiles Protein kinase domain profile. 346 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3770 642 MobiDBLite consensus disorder prediction 226 245 - -
Lja1g3770 642 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lja1g3770 642 SUPERFAMILY L domain-like 28 210 - -
Lja1g3770 642 MobiDBLite consensus disorder prediction 226 251 - -
Lja1g3770 642 ProSitePatterns Protein kinases ATP-binding region signature. 352 384 IPR017441 GO:0005524
Lja1g3770 642 PANTHER LRR RECEPTOR-LIKE KINASE 11 623 - -
Lja1g3770 642 Pfam Protein kinase domain 349 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3770 642 SUPERFAMILY Protein kinase-like (PK-like) 350 613 IPR011009 -
Lja1g3770 642 Pfam Leucine rich repeat 118 175 IPR001611 GO:0005515
Lja1g3770 642 Gene3D Ribonuclease Inhibitor 25 187 IPR032675 -
Lja1g3770 642 Gene3D Ribonuclease Inhibitor 188 232 IPR032675 -
Lja1g3770 642 MobiDBLite consensus disorder prediction 618 642 - -
Lja1g3770 642 Gene3D Transferase(Phosphotransferase) domain 1 422 637 - -
Lja1g3770 642 Gene3D - 238 303 IPR036257 -
Lja1g3770 642 Gene3D Phosphorylase Kinase; domain 1 312 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3770 Lja-Chr1 47351805 47354962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3770 22 631 Receptor kinase-like Gene Family AT5G35390 46.929 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g3770 Pkinase 2.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3770 - - gmx:100803999 807.364