Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3757 ATGCAAAAGGAAAAGGAAGTGATTATCAAGGAGGGGACGGAAACTACTGAAATGGAAGGAAGTCATGGTGGAAAGGAGGAAACCCTACCTCCAGGGTTTCGATTTCATCCTACTGATGAAGAACTCATCACTTGCTATCTTATAAACAAGATTTCAGATTCAAGTTTTACAGGCAAAGCTATAACTGATGTGGATCTCAACAAATGTGAACCATGGGAGCTTCCAGGGAAGGCTAAGATGGGAGAAAAGGAATGGTACTTCTTCAGTCTGAGAGATCGTAAATACCCAACCGGTGTGAGAACTAACAGAGCCACGAACACTGGGTATTGGAAAACCACAGGGAAAGACAAGGAGATATTTAACAGTGTTACATCAGAGTTAGTTGGGATGAAGAAGACTTTGGTTTTCTACAAAGGTAGAGCTCCTAGAGGAGAGAAAAGTAACTGGGTCATGCATGAATACCGCATCCACTCTAAATCAACCTTCAGGACTAACAAGCAGGATGAATGGGTGGTTTGTAGGGTATTCAAGAAGAGTGCTGGTGCAAAAAAGTTCCCTACTTCCAACCATACAAGGGCAGTACTAAATCCTTATAGCCTTGAACTAGCTCCTAACATGATGCCACCACCAATGATGCAGCTTGCATCAGATCCTTCTGCTGCTCATTTCCTCTATGGAAGGAACTACATGGGAAACACTGCAGAGCTAGCTGAAATTGCAAGGGTTTTGAGAGGAGGTGGATCAAGCAGTGGTTTTAACCTGCAGCCAATGGTGCAACAATCCCAGTTGAACTGCTACCCAGTGCCAGCAGTAGGAGGAGCAGGAGGAGGAGGATTCACCATTTCAGGACTTAATTTGAATCTCGGAGGTGGAGGAGGAGCGGTCGCGTCACAACCGGTTTTGCGGCCAATGCTGCAACCTTCTCAACAACCTCACCCTGCTCAGACAATGGCTCAAGTAATGCTGCATGATGTGAGTTCTAACATGATGACAGGGAATCCTCTTGGTGCAGAGATTATTAATAATGGAGGTTATGGCGGCGGCACAGAAATGAGCAACGTCACGAATAATAATCATCATGGCCATGGCAATAGGTACAATATGGGCATGGAGCATTGCGTAGATCTTGAGAATTACTGGCCTTCCTACTAA 1152 0.4505 MQKEKEVIIKEGTETTEMEGSHGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQDEWVVCRVFKKSAGAKKFPTSNHTRAVLNPYSLELAPNMMPPPMMQLASDPSAAHFLYGRNYMGNTAELAEIARVLRGGGSSSGFNLQPMVQQSQLNCYPVPAVGGAGGGGFTISGLNLNLGGGGGAVASQPVLRPMLQPSQQPHPAQTMAQVMLHDVSSNMMTGNPLGAEIINNGGYGGGTEMSNVTNNNHHGHGNRYNMGMEHCVDLENYWPSY* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3757 383 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g3757 383 SUPERFAMILY NAC domain 24 178 IPR036093 GO:0003677|GO:0006355
Lja1g3757 383 ProSiteProfiles NAC domain profile. 29 178 IPR003441 GO:0003677|GO:0006355
Lja1g3757 383 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 17 379 - -
Lja1g3757 383 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g3757 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 379 - -
Lja1g3757 383 Pfam No apical meristem (NAM) protein 30 156 IPR003441 GO:0003677|GO:0006355
Lja1g3757 383 Gene3D NAC domain 38 182 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3757 Lja-Chr1 47171028 47173664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3757 22 383 NAC Transcription Factor Family AT2G24430 50.262 8.22e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g3757 NAM 5.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3757 - - lja:Lj1g3v2035130.1 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3757 1 47171028 47173664 Lja1g3757 1 47171028 47173664 ECH