Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3728 ATGGAGCAGTGCGAAACGACGCTGAGTTTAGCTCCTCCTCGGAAATCGGCCAGGCAATTGGATTTCGCCGCCGTATGTGGAGGTCCGGCTCACCTCAAACTGCCACCGCCGCCGCCGCCGGTGGCGCAGTTACTGCTTCCATCGATTCATCATCTGCCGCCGTCGCATTTGGAATTGGAATTGCATCCACCAGGGCAACGGCCGTGGTTTTATTCACCGCCGCAGGTGCAACAGCAAAGAACAATGCAGTCTCCGGTGATGGCACAATTGCAGGCACCGCCGCCACAGCTGGTTTCGCCGGTTCGGCTATTACCGCACCCGACGCCGGTGAAGAGGTTGCAAGCGATGAGGGAGGAGTCTCCTAGATCACATCCTCGAAATAATGTGGAGTTAAAAGACAGCACTCCAAAGAAACAAAAACAATGTAACTGCAAAAATTCTCGATGCCTCAAATTGTACTGCGAGTGCTTTGCTGCTGGAATCTACTGTGATGGCTGCAACTGTCTAAATTGTCACAATAATGTGGATAATGAAGCTGCCAGACAGGAGGCTGTTGGAATAACATTGGAACGCAATCCGAATGCTTTCAAACCAAAAATCGCTAGCAGTCCACAAGAACCACGGTATTCTAAGGTAGATGTACCTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGTCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGATTGCAAGAATTCTGAAGGAAGTACTGAAAGAAGGGCATTTTTTCATGAAGAGTATAATCTAGTTCCGCCCAAACAGGCAGTTAATGCTGTCACTAGTGGAGCTGTTAGGTCCTTCAGCTATGGACCTCACATAACACCCAAGAAAAGAAAAATCCAGGAAATATTTTCTGGCAAATCAGCTGTAGATCAAACTGTTAGCATGACTTCTCAATACCAACAGCAGGAAATTGATCCTATAGCTTCATCACCCTCATCTTTGTCAGCTTCCGTTGTTTCTGATGCCAACACAAGAACTTCAGGGCCTTCAAGTTCTACATACAGGTCCATTTTGGCGGATGTCATTCAGACACAGAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCTGGAGTAGCTGCTAAGACAAATGCAGAAGTGAGAAACAAATTCGATTGGCAAACAGAGACTACGGAATCTGAAGCACTGCAAGACACTAGAGATGTTCACAATCCTGTTGGTGACAAGATGTCCACAGATGCAGTTGATATTCACCATTATAATAGGCCATTGTCTCCAGAAACACGTGCATTAATGTGTGATGAACAAGATGTGATTTTTTCTGGTAATGGTTCTGCAAATGGAGTGCCATGTGACGGTCCTTGTCAAAACATGATTGAAAAATCATCTAATTCTGGTGGATGCACTGATGTTTATGAAGAGCAGGAAAGGTTTGTTCTGACCAAGTTCTGGGATGTTCTTCGTGGACTCATTACTCTTGGTAGCATAAAAGAAACAGCATGCTCTTCATTAGCCAGGAAAGATGTGGGAATGACGAAAGAACCTGCAGAGAATGGCCATAGTGGAGCTGAAACTGACACAGGGTGTGAGAAGGGAATTCACAGCAACTGCACTTCAAATTGCCCCATCTCAGAGGTTACTGAAATATCTCGGACAATCTATTCAATAACTGATGGACATGGTAATAAAGATCTTTCATGGAGGTCGCTTGCAAATTGGAATAACAGAGGTGATAAAATCTGA 1791 0.4456 MEQCETTLSLAPPRKSARQLDFAAVCGGPAHLKLPPPPPPVAQLLLPSIHHLPPSHLELELHPPGQRPWFYSPPQVQQQRTMQSPVMAQLQAPPPQLVSPVRLLPHPTPVKRLQAMREESPRSHPRNNVELKDSTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCLNCHNNVDNEAARQEAVGITLERNPNAFKPKIASSPQEPRYSKVDVPEIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNSEGSTERRAFFHEEYNLVPPKQAVNAVTSGAVRSFSYGPHITPKKRKIQEIFSGKSAVDQTVSMTSQYQQQEIDPIASSPSSLSASVVSDANTRTSGPSSSTYRSILADVIQTQNVKNLCSLFVVLSGVAAKTNAEVRNKFDWQTETTESEALQDTRDVHNPVGDKMSTDAVDIHHYNRPLSPETRALMCDEQDVIFSGNGSANGVPCDGPCQNMIEKSSNSGGCTDVYEEQERFVLTKFWDVLRGLITLGSIKETACSSLARKDVGMTKEPAENGHSGAETDTGCEKGIHSNCTSNCPISEVTEISRTIYSITDGHGNKDLSWRSLANWNNRGDKI* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3728 596 MobiDBLite consensus disorder prediction 114 136 - -
Lja1g3728 596 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 574 - -
Lja1g3728 596 MobiDBLite consensus disorder prediction 407 430 - -
Lja1g3728 596 SMART CXC_2 137 177 IPR033467 -
Lja1g3728 596 SMART CXC_2 222 263 IPR033467 -
Lja1g3728 596 PANTHER TESMIN/TSO1-RELATED 1 574 IPR028307 -
Lja1g3728 596 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 139 174 IPR005172 -
Lja1g3728 596 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 225 260 IPR005172 -
Lja1g3728 596 ProSiteProfiles CRC domain profile. 138 262 IPR005172 -
Lja1g3728 596 MobiDBLite consensus disorder prediction 410 430 - -
Lja1g3728 596 MobiDBLite consensus disorder prediction 332 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3728 Lja-Chr1 46688913 46693184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3728 12 525 CPP Transcription Factor Family AT4G29000 46.715 7.83e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lja1g3728 TCR 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3728 - K21776 gmx:100811459 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3728 1 46688913 46693184 Lja1g3728 1 46688913 46693184 ECH