Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3718 ATGGAGAGGATCATCGGCGGAAAGTTTAAGATTGGCCGCAAAATTGGTAGCGGCTCGTTTGGTGAAATTTATATAGCCTCAAATATTGATACCGCTGAGATTGTTGCCGTCAAGATGGAAAACAAGAAGACCAAACATCCGCAACTATTGTTTGAGGCCAAGTTATATAGTATTTTCCAAGGAGAAAGTGGTATTCCAAGTATGAAATGGTGCGGTACTGATGGAGACAATAATGTTCTAGTTATGGATCTTCTGGGACGGAGTCTGGAGGACCTTTTTGTCTATTGCGGGCGGAAGTTTTCATTGAAAACAGTCTTGCTGTTGGCCGACCAAATGATTTCGAGAATAGAGTACATGCACTCCAAGGGTTTTTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGAATTGGGAGAAAATCAAGGCAGGTTTATGTTATTGATTTTGGACTAGCAAAAAGATATTGGGACCCTAAAACACTCAAGCATATTCCTTACAGGGAGAATAAAAACTTAACAGGGACGGCACGTTATGCCAGTCGCAATACTCACATAGGAATTGAGCAAGGTCGTCGTGATGATTTGGAATCTCTTGGTTATGTACTTATGTACTTTTTAAACGGAAGCCTTCCTTGGCAGGGTCTGAAAGCAGTCACCAAAAAGGAAAAATATGACAAGATTTGTGAGAAGAAGTTATCAACTCCTTTTGAGATGCTTTGCAAGTCATATCCTGTGGAGTTCGCTTCTTACTTTCATTACTGTCACTCCTTGCAATTTGATCAAGATCCGGATTATGGATTCTTAAAGCGTCTGTTTCGTGATTTGTTCACTCGTGAAGGATATGATCGTGACTATTTATACGACTGGTCCATCCTAAAATATCAGCAGGCGCAACAGACAAAGAGACCAAATCAATTATTTCCTTCAGCTGCTGTGCCTAGCAGTCTAGCACCAAGTCTTACTGAAAAGAATGCAGGAACTGATGATTCGGGTCAAATGAATATAACAAAAATGTTTGCCAATCTTGAACGCCCAAGTGTTTGTGCAAGGCCTAAGCCATCAAATGTTCAGAATCCGAATACCAAGAATCAGGCCGAGAAACATAATGTTCCACCCACTTCATCTGCCCCGCCCAAGTCATCTACAGAAAATGTCTCAAAGCCAGAAAGGTCCGTAGGAACTTCTAACCCGAGTCGTGTTTTTGGGGCTAATTCCCATGTTTCAAGTAGCTGGATTCCTTCTCTACGCCGAATTTCATCAGCCAAATAG 1272 0.4151 MERIIGGKFKIGRKIGSGSFGEIYIASNIDTAEIVAVKMENKKTKHPQLLFEAKLYSIFQGESGIPSMKWCGTDGDNNVLVMDLLGRSLEDLFVYCGRKFSLKTVLLLADQMISRIEYMHSKGFLHRDIKPDNFLMGIGRKSRQVYVIDFGLAKRYWDPKTLKHIPYRENKNLTGTARYASRNTHIGIEQGRRDDLESLGYVLMYFLNGSLPWQGLKAVTKKEKYDKICEKKLSTPFEMLCKSYPVEFASYFHYCHSLQFDQDPDYGFLKRLFRDLFTREGYDRDYLYDWSILKYQQAQQTKRPNQLFPSAAVPSSLAPSLTEKNAGTDDSGQMNITKMFANLERPSVCARPKPSNVQNPNTKNQAEKHNVPPTSSAPPKSSTENVSKPERSVGTSNPSRVFGANSHVSSSWIPSLRRISSAK* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3718 423 MobiDBLite consensus disorder prediction 348 423 - -
Lja1g3718 423 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3718 423 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3718 423 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lja1g3718 423 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 402 - -
Lja1g3718 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lja1g3718 423 MobiDBLite consensus disorder prediction 309 333 - -
Lja1g3718 423 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Lja1g3718 423 PANTHER CASEIN KINASE-RELATED 1 402 - -
Lja1g3718 423 Pfam Protein kinase domain 10 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3718 423 MobiDBLite consensus disorder prediction 352 423 - -
Lja1g3718 423 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3718 Lja-Chr1 46503060 46508810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3718 9 236 AGC Kinase Gene Family AT3G08720 25.431 2.85e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lja1g3718 Pkinase 8.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3718 K08960 K08959 gmx:100810377 681.404