Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3714 ATGTGTAACATACTCTATAAGTCCCATTTGGTTATCATGTTCATGATGGTTCTTTCTCTACCTTTCAATGTTCAATCCCAAGACAAGGATGTACAGAACATGCCAGAAATACCCAAAAGTGTCCATCCAAGCAAAGGAGTTATAATAATAGTTCTCTCTATAATGTTTGCCTCAGCATTTCTCTTACTTGCTTATGTAAAGTTCTGCAGAATCAGCTCAGCCCAAATTCTGAACCAAAACTCCAATCTCCAAACTCTAACAAGATCAAGGTCAAGACTTTCTTCTGGGGTTGACAAACAAGTAATTGAATCACTCCCTTTCTTCAAGTTTTCTTCCTTAAAGGGATCCAAACAAGGCCTAGAATGCACCGTTTGTTTATCGAAATTCGAGGACATCGAGGTTTTAAGGTTGTTGCCAAAGTGCAAACATGCTTTCCACTTGAGTTGCATTGACAAGTGGCTAGAAAGCCACTCTACTTGCCCTCTTTGCAGGTACAGAGTTGAAGCAGGGGACATCAAGAACTTCTCTTATTCATTGAGTTCAAGGTCTGTGAGAGTTCCTTCAAATTTAACTGAGGACCCAAATCTTGAAATTTTTATCCAAAGAGATGGTGGTTCAACTGCAAAGTTCAAACCTTTGCACTTGATCAATCATAGAATTTTGATCTCTGATGTTGTTACAAGGAGCAGGTGGAGTGATCTTAATTCCTCAGATTTGCTATCATTGAACTCTGAGATGCTTAATGACATGTGTAGCACTAGATTTTCTCCTTCTGAATCCAACAACAGTGAGAAGTTTCAAGGAGTTTCAATCCATTTTCCCAGTGCTTCCAATGAGGAAGAAGATGAGAATTCGTTCACGGCGCTGAATCCGGCTGAGAAGAGGTCCATGTCTGAGATTGCGAATGTTCCAAGGTTTTCTGAGATGAGCAAGAGGAACAGAATCAGAGAATGTAATGGGGAGAATGGAAGTGAAGAGAGACTTTTGAGGATTTGGATGCCAATTGCAAGAAGAACAGTCCAATTGTTTGCAAGACAAGAAAGAAATTTAGTTGAGTTAGAAGATAGACCTTTAGCTTCAAATGTTTGA 1089 0.3949 MCNILYKSHLVIMFMMVLSLPFNVQSQDKDVQNMPEIPKSVHPSKGVIIIVLSIMFASAFLLLAYVKFCRISSAQILNQNSNLQTLTRSRSRLSSGVDKQVIESLPFFKFSSLKGSKQGLECTVCLSKFEDIEVLRLLPKCKHAFHLSCIDKWLESHSTCPLCRYRVEAGDIKNFSYSLSSRSVRVPSNLTEDPNLEIFIQRDGGSTAKFKPLHLINHRILISDVVTRSRWSDLNSSDLLSLNSEMLNDMCSTRFSPSESNNSEKFQGVSIHFPSASNEEEDENSFTALNPAEKRSMSEIANVPRFSEMSKRNRIRECNGENGSEERLLRIWMPIARRTVQLFARQERNLVELEDRPLASNV* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3714 362 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Lja1g3714 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 204 - -
Lja1g3714 362 PANTHER RING-H2 FINGER PROTEIN ATL4J 208 264 - -
Lja1g3714 362 Pfam Ring finger domain 121 164 IPR001841 -
Lja1g3714 362 PANTHER RING-H2 FINGER PROTEIN ATL4J 18 204 - -
Lja1g3714 362 SMART ring_2 122 163 IPR001841 -
Lja1g3714 362 PANTHER RING-H2 FINGER PROTEIN ATL4J 275 354 - -
Lja1g3714 362 SUPERFAMILY RING/U-box 101 168 - -
Lja1g3714 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 208 264 - -
Lja1g3714 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 275 354 - -
Lja1g3714 362 Coils Coil 336 356 - -
Lja1g3714 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 172 IPR013083 -
Lja1g3714 362 CDD RING-H2_PA-TM-RING 121 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3714 Lja-Chr1 46487136 46488287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3714 43 348 C3H Transcription Factor Family AT2G20030 39.660 7.24e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3714 K10664 - gmx:100816668 420.239