Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3694 ATGGAGGCACACGAAGAGTTTTTCTCTCCACAATTCCCCTCCGACACCACCACCACCACCAACATTAACAACGCCACCGCTGCTGCCGCCGACCAATTCATCGTGGAGGACCTCTTCGACTTCTCCAATGATGATGCCACCTTCGATGACTCTCTCCCTGCCAACTCCACCGAGGGTTCTCCTCCCCCTCTTGACTCCACCACCACCACCACCACCACCACCACCAATTCCAATTTCCTCCACGACATTTCCCCCCGGAATTCCGCCGACGGCAATTTCTCCGGCGACCTCTCCGTCCCGTATGATGAACTTGCGGAGCTGGAATGGCTATCCAAATTTGCCGAGGAATCATTTTCAAGTGAGGACTTGCAGAAGATGCAACTGATATCTGGAATGAAAGTGCCAAATGATGCAGCATCGCAGACCCATGATGAGCCCACCGGCCCACTCTTCAGCCCGCCCGTGTCGGTTCCTGCAAAAGCCCGCAGCAAGCGGTCTCGTGGCCCACCCTGCAACTGGACTTCACGCTTACTTGTCCTTTCTCCATCCACCACTCCAACATCCTCCTCCGCCTCTGACTCTGACACCACTGCCGCCCCCGCCCTCGTGCCGACGGCGGTGAAAAAGCCCTCCGCACTGAGAAAGAGGGATGCTGACGTAGGCGATGGCCGTAGGTGTCTGCATTGCGCTACAGACAAGACCCCACAGTGGCGAACTGGGCCCATGGGCCCGAAGACGCTGTGTAATGCTTGCGGCGTCAGGTACAAGTCAGGCCGCCTCGTGCCTGAATACAGGCCCGCAGCGAGCCCGACTTTTATGCTGACGAAGCACTCCAACTCGCACCGCAAGGTGCTCGAGCTGCGGCGCCAGAAGGAGATGATGAAGGCTCAGCAGCAACAATTGCTCCAAATGCAACATCACCAGAGCATGATGTTTGATGCGTCATCCAACGGTGACGATTACCTGATCCATCAACACGTGGCGGGCCCTGATTTCTCGCACCTAATCTAA 1011 0.5687 MEAHEEFFSPQFPSDTTTTTNINNATAAAADQFIVEDLFDFSNDDATFDDSLPANSTEGSPPPLDSTTTTTTTTTNSNFLHDISPRNSADGNFSGDLSVPYDELAELEWLSKFAEESFSSEDLQKMQLISGMKVPNDAASQTHDEPTGPLFSPPVSVPAKARSKRSRGPPCNWTSRLLVLSPSTTPTSSSASDSDTTAAPALVPTAVKKPSALRKRDADVGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMLTKHSNSHRKVLELRRQKEMMKAQQQQLLQMQHHQSMMFDASSNGDDYLIHQHVAGPDFSHLI* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3694 336 Pfam GATA zinc finger 226 259 IPR000679 GO:0006355|GO:0043565
Lja1g3694 336 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g3694 336 MobiDBLite consensus disorder prediction 136 216 - -
Lja1g3694 336 PIRSF Txn_fac_GATA_plant 14 316 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lja1g3694 336 CDD ZnF_GATA 225 272 IPR000679 GO:0006355|GO:0043565
Lja1g3694 336 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355|GO:0043565
Lja1g3694 336 PANTHER GATA TRANSCRIPTION FACTOR 2 336 - -
Lja1g3694 336 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355|GO:0043565
Lja1g3694 336 PANTHER GATA TRANSCRIPTION FACTOR 2 336 - -
Lja1g3694 336 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 284 - -
Lja1g3694 336 Gene3D - 217 301 IPR013088 GO:0006355|GO:0008270
Lja1g3694 336 Coils Coil 284 304 - -
Lja1g3694 336 SMART GATA_3 220 270 IPR000679 GO:0006355|GO:0043565
Lja1g3694 336 MobiDBLite consensus disorder prediction 176 199 - -
Lja1g3694 336 MobiDBLite consensus disorder prediction 49 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3694 Lja-Chr1 46250929 46253272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3694 26 336 C2C2-Gata Transcription Factor Family AT4G32890 50.307 4.81e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja1g3694 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3694 - - gmx:100776588 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3694 1 46250929 46253272 Lja1g3694 1 46250929 46253272 ECH