Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3692 ATGATGGCGGTGAGTTCAGGGTCCTCCAGAGATGGGAGCAAGGTGGCAATGGATAACGGGAAATACGTCCGGTACACGCCGGAGCAGGTGGAAGCACTTGAAAGGCTTTACCATGAATGCCCCAAACCCACCTCCCTCCGCCGCCAACAACTCATCAGAGAGTGCCCCATTCTCTCTCACATAGAACCTAAGCAGATCAAGGTTTGGTTCCAAAACAGAAGGTGCAGAGAGAAGCAGAGGAAAGAATCATCACGGCTGCAAGCTGTGAACAGGAAGCTAACAGCGATGAATAAACTATTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGTTGGTGTACGAGAATGGCTTTTTCCGCCAACAAACACAGAATGCCACCCTTGCCACCACGGATACGAGCTGTGACTCGGTGGTAACCAGCGGTCAACGCCACTTGACACCGCAGAATCCACCGAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCTGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTGAATGTGATGTCCACTGGAAATGGAGGAACCATTGAACTGCTTTACATGCAGTTGTATGCGCCAACAACTTTAGCACCAGGTCGTGATTTCTGGTTGCTGCGCTACACATCTCTTATGGAGGACGGTAGTCTTGTGGTATGTGAAAGATCACTTAATAACACTCAGAATGGTCCTGCTATGCCTCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGCGGGTATCTGATTAGACCTTGCGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGATTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCGCTGTATGAATCATCTATGCTGCTTGCTCAGAGGACAACAATGGCAGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCATGTGTCACGGGATGGGGAAGAAGGCCTGCAGCCCTACGTGCCCTTAGTCAGCGATTGTGCAAGGGCTTTAATGAAGCTGTGAATGGATTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCACCCAGCAAGATGATGGGTGCAAATCTTGGATATAGCAATGGATTCCCATCCATGCCCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGTTACAGAATGTCCCTCCAGCTATTCTTCTTAGATTCTTGCGGGAGCACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGCCCCTGTAGCTTGCCAGGGGCCAGAGGAAGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGAATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATCGGGACGACATGACTATGCCTGGTGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGATGAGCATGCAGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCGTCTTTCTCTGATGATGCACCCATTTTACCTTCCGGTTTTCGTATTGTACCTCTTGATTCTGGCACGGATGCTGCTAGTCCAAACCGGACACTTGATCTTGCCTCATCACTTGAGGTTGGAACCACAGCAAACAAAGCTGCTGGTGCCAATTCAGGTCATTCTGGAAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGATAATATAGCAACTATGGCCCGACAATATGTGCGTAGTATTGTTGCATCTGTTCAGAGGGTTTCCTTAGCACTTTCTCCTTCGCGCTTCGGTTCTCAAAGTGCTTTTCACTTACCACCTGGTACTCCTGAGGCTCAAACACTTGCTCGGTGGATCTGTAACAGCTATAGGTTCTATCTAGGGGTAGAGCTACTAAAGTGTGAAGGCAGTGAGCCCATTCTCAAATCCCTTTGGCATCACTCAGATGCAGTTCTGTGCTGCTCTTTAAAGGCATTACCGGTTTTTACATTTGCAAATCAAGCTGGACTTGACATGCTTGAAACAACATTGGTTGCCCTTCAAGACATCACCCTGGAGAAAATCTTTGATGACAACGGAAAGAAAATCCTGTGCTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATGCAAGGTGGCATCTGTTTGTCCAGCATGGGGAGGCCAATATCCTATGAGAGAGCAGTGGCATGGAAAGTGTTAAACGAAGAAGAATCAGCTCATTGCATCTGTTTCATGTTCATCAATTGGTCCTTTGTCTGA 2520 0.4782 MMAVSSGSSRDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGFFRQQTQNATLATTDTSCDSVVTSGQRHLTPQNPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLMEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMILEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPCVTGWGRRPAALRALSQRLCKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGANLGYSNGFPSMPSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARGSFGGQVILPLAHTIENEEFMEVIKLENMGYYRDDMTMPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPLDSGTDAASPNRTLDLASSLEVGTTANKAAGANSGHSGSTKSVMTIAFQFAFEVHLQDNIATMARQYVRSIVASVQRVSLALSPSRFGSQSAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSEPILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKILCSEFPQIMQQGFMCMQGGICLSSMGRPISYERAVAWKVLNEEESAHCICFMFINWSFV* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3692 839 SMART HOX_1 18 84 IPR001356 GO:0003677
Lja1g3692 839 Pfam Homeodomain 21 79 IPR001356 GO:0003677
Lja1g3692 839 Gene3D - 12 87 - -
Lja1g3692 839 Gene3D - 199 380 IPR023393 -
Lja1g3692 839 Coils Coil 86 117 - -
Lja1g3692 839 PANTHER CLASS III HD-ZIP PROTEIN CNA1 8 839 - -
Lja1g3692 839 Pfam START domain 165 373 IPR002913 GO:0008289
Lja1g3692 839 SUPERFAMILY Bet v1-like 164 375 - -
Lja1g3692 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 8 839 IPR044830 GO:0003700
Lja1g3692 839 CDD bZIP 73 112 - -
Lja1g3692 839 Pfam MEKHLA domain 698 838 IPR013978 -
Lja1g3692 839 CDD START_ArGLABRA2_like 159 374 - -
Lja1g3692 839 CDD homeodomain 21 81 IPR001356 GO:0003677
Lja1g3692 839 SMART START_1 164 374 IPR002913 GO:0008289
Lja1g3692 839 ProSiteProfiles START domain profile. 155 357 IPR002913 GO:0008289
Lja1g3692 839 ProSiteProfiles 'Homeobox' domain profile. 16 80 IPR001356 GO:0003677
Lja1g3692 839 SUPERFAMILY Homeodomain-like 20 82 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3692 Lja-Chr1 46225577 46232371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3692 17 839 Homeobox Transcription Factor Family AT4G32880 80.314 0.0 1391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja1g3692 START 6e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3692 K09338 - gmx:100815727 1579.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3692 1 46225577 46232371 Lja1g3692 1 46225577 46232371 ECH