Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3682 ATGCCTGAACTGCGTACCCGACCACGCAGAAACCGCCCGCACATAGATAACGCTAATCCCAACCCGATCACCCATCCGGTGGCCGCCGTAGTGAAGAATCGGAGACAGAAGAAGGTTTGCGCTGCCGGTGATATTGTGAACAACGACGAAGCCGGTGCTGTTCGTGAAGGCAGAGCCGAAGAAGAGGTAGGAGAGAAGGTTTTGGGAGAGGGAGCTATGGATGACAACGATAGTGGTGGCTTCAGCGCTGATAAGGCTCCGGGAGCTGAAGATGAGGGCAGCACTGCTCCGCTTCCTGAGAAGGTCCAGGTTGGTGGTTCTCCGGTATACAGAGTCCACAGAAAACTTGGGAAAGGAGGATTTGGACAAGTTTATGTTGGTCGCCGCATAGGAGCTGGTTCCGGTGCTATTGAGGTAGCCTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAACTATGCACCTCCTTACGAGTGGCAAGTGTACAATACTTTAGGTGGTAGTCATGGTGTTCCACGAGTTCATTACAAGGGACGGCAAGGTGACTACTATATTATGGTCATGGATATGCTTGGCCCTAGTCTATGGGATGTGTGGAATAATAACTCACAAACGATGTCAACTGAAATGGTGGCGTGTATTGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATACGTGCATGGTGATGTGAAACCCGAAAACTTTTTGCTTGGGACCCCTGGAACTCCTGATGAGAAGAAGTTGTTTTTGGTTGATCTTGGATTAGCATCTCGGTGGCGTGACAATTCAACTGGCCTTCATGTTGACTATGATCAACGTCCGGATGTATTTAGGGGCACAGTTCGATATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTAGAATCTCTTGCATACACACTTGTCTTCCTTCTTCGTGGTCGGCTTCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCAACTTCTCCAGAAACTATGTGTTGCTTTTGTCCTGAACCTTTCCGACAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAGCCAAATTATGCTAAATATATATCCCTTTTTGATGGGATTGTGGGTCCAAATCCTAACATTAGGCCAATAAATACTGAGGGTGCTCAGAAGCTTATATGTCAGGTTGGACACAAGAGAGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCCGAATGGGAATACCAGCAACACAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTACAATGTGGCTGATGCACGACTGGCACAACACATTGAGAAAGGGAATGAAGATAGTTTATTTATCAGCAGTGTGGCTTCTTGTTCCAATCTTTGGGCTCTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCTCCCCACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAGAACTATTACATTAGTGCCATAGCTGGAGCTAATAACGGATGCTCATTGGTTGTTATGTCTAAAGGGACCCAGTACTCACAGCAATCTTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTAACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCCCGTGGTGCTGGGTTCTCAGACCAGGTTGTAGAACTTGATTTTCTGTATCCCAGTGAAGGTATTCATCGGAGGTGGGATAACGGTTACCGCATTACTTCAACTGCTGCCACATGTGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAACTGATGAAACTCAAGAGACACTCCGGACATCTGCTTTTCCTAGTACTCATGTCAAGGACAAATGGGCAAAGAATCTCTATATTGCTTCTATTTGTTATGGGAGAACAGTTTCATAA 2013 0.4496 MPELRTRPRRNRPHIDNANPNPITHPVAAVVKNRRQKKVCAAGDIVNNDEAGAVREGRAEEEVGEKVLGEGAMDDNDSGGFSADKAPGAEDEGSTAPLPEKVQVGGSPVYRVHRKLGKGGFGQVYVGRRIGAGSGAIEVALKFEHRSSKGCNYAPPYEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSQTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTPDEKKLFLVDLGLASRWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETMCCFCPEPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPNIRPINTEGAQKLICQVGHKRGRLTMEEDDDEQPKKKVRMGIPATQWISVYNARRPMKQRYHYNVADARLAQHIEKGNEDSLFISSVASCSNLWALIMDAGTGFTAQVYELSPHFLHKEWIMEQWEKNYYISAIAGANNGCSLVVMSKGTQYSQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATCDQAAFVLSVPRRKPTDETQETLRTSAFPSTHVKDKWAKNLYIASICYGRTVS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3682 670 CDD STKc_CK1 110 379 - -
Lja1g3682 670 SUPERFAMILY Protein kinase-like (PK-like) 110 384 IPR011009 -
Lja1g3682 670 ProSitePatterns Protein kinases ATP-binding region signature. 116 142 IPR017441 GO:0005524
Lja1g3682 670 MobiDBLite consensus disorder prediction 68 103 - -
Lja1g3682 670 Gene3D Transferase(Phosphotransferase) domain 1 84 425 - -
Lja1g3682 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Lja1g3682 670 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g3682 670 PANTHER - 70 644 - -
Lja1g3682 670 ProSiteProfiles Protein kinase domain profile. 110 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3682 670 Pfam Protein kinase domain 110 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3682 670 PANTHER CASEIN KINASE-RELATED 70 644 - -
Lja1g3682 670 SMART serkin_6 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3682 Lja-Chr1 45995446 46003158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3682 115 379 MAP Kinase Kinase Kinase AT5G50180 24.101 3.72e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lja1g3682 Pkinase 1.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3682 - - zju:107420390 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3682 1 45995446 46003158 Lja1g3682 1 45995446 46003158 ECH