Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3653 ATGTTCACAATTCACTTCACCCACCCAGTAGTACTACAACAACAAGAACCTGCTTTTTCATCACCAAGCCTTTGTCACCCCAAAGTGATCCACTCAACCATTCCATCTTATATACATCTCTTTCTCATCTCAACGTTTATACTAACCACAAACATCATAACCTCTATCTCCTTCCCCTCTATCCCCTCCTCTCTCAGAATGAGTCATTCATTCTTCGTCTCTGTTATTATTGGAGTCATCATTTCCATGACTAGCATATCACATGTTATGAGCAGTACCAACCAGTCTCAGTTTTTTTCTCTGATGAAGGAGTCTCTATCAGGGAACTTCCCTCTGGATTGGGATTACAGAGTTGGGAAACCATTCTGCAACTTCACAGGAGTTGCCTGCAACAGCAAAGGTGATGTTATCAATCTAGACTTTTCAGGCTGGTCACTTTCAGGGAACTTCCCTTCAGATTTCTGCTCTTACCTTCCAGAGCTGAGAGTTCTTAAACTCAGCCATACCAGGTTCAAGTTCCCTGCACACAGCATAGTCAACTGTTCCCACTTGGAAGTGCTTGACATGAATCACATGTTTCAGACCACCACACTCCCCAACTTCTCTCCTTTGAAATCTCTCAGGATTCTTGACCTATCCTACAACCTCTTCACTGGTGAATTCCCCATGTCAGTTTTCAACCTGACAACTCTGGAGGTGCTCAACTTCAATGAAAACCAAGGCTTCAAATTCTGGCAGCTCCCAGCAAGATTTGACAGGCTGCAAAATCTCAAAACCATGGTGCTGACAACATGCATGTTGCATGGCCAAATCCCAGCATCCATAGGAAACATGACTTCTCTTATTGATCTTGAATTGAGTGGGAATTTCCTCTCAGGGAAAATTCCCGCAGAGCTTGGATTGCTGAAGAACTTGCAACTGCTTGAGCTTTACTATAACTACCATCTAGTTGGGAACATACCAGAGGAGCTGGGAAATCTCACTGAGCTCATAGACCTGGACATGTCGGTGAACAAGCTGACAGGGACCATCCCAGAATCCATATGTCGCCTTCCCAAGCTTCAAGTTCTGCAGCTTTACAACAACAGCCTCTCAGGAGAAATCCCAGGTGCGATTGAGAACTCAACAGCCTTGAGCACCCTATCTCTCTACGACAACTTCCTGGGAGGACATATTCCCAAGAAGCTGGGACAGTTCTCAGGAATGGTGGTTCTGGACCTGTCTGAAAACAGATTGACTGGTCCATTGCCAACAGAAGTTTGCAAAGGAGGTAAGCTGCAATACTTCCTTGTCTTGGATAACATGTTTTCTGGTGAGATACCAGAGAGTTATGCAAACTGCATGCAGCTGTTGAGGTTTAGAGTCAGCAATAACCGTTTGGAGGGCACAGTTCCCAAGGGACTCCTTGGTCTACCATACGTTTCAATCATTGATTTGAGTAGTAATAATTTGACTGGTCCAATTCCCGAGATTAATGGGAACTCTAGAAACTTGTCTGAACTGTTCCTACAGAGGAACAAGATATCAGGACTCATACCTCATACAATCTCTAGAGCTTTTAGCCTTGTCAAGATTGATTTCAGCTATAATCTTCTCTCAGGTCCAATCCCTTCTGAGATTGGCAACCTGGGAAGGCTGAATTTACTCATGTTACAAGGGAACAAGCTGAGTTCTTCAATCCCAAGTTCACTCTCCTCCTTGAAGTCCCTCAACCTTCTTGATCTCTCCAACAACCTCTTAACTGGGACCATCCCTGAAAGCCTCGCTGTGCTGCTACCCAATTCCATTAACTTCTCTCAAAATTTGCTTTCTGGTCCAATTCCTCCCAAGTTAATCAAAGGGGGTTTAATTGAAAGCTTTTCAGGCAATCCAGGTTTGTGTGTGCTGCCAGTATATGCTAATTCATCTGATCAAAAGTTCCCCCTATGTTCACACGCCAACAAGAGCAAGAGGATAAACACCATCTGGGTAGCTGGGGTATCAGTGGTTTTGATCTTTATTGGAGCTGTCTTGTTCCTCAAACGTAGGTGCAGCAAGGACACAGCTGTTATGGAACATGAGGACACACTGTCTTCTTCATTCTTCTCTTATGATGTTAAGAGCTTTCACAAGGTTACTTTCGACCAAAGGGAGATCGTTGAATCCATGGTGGATAAGAACATCCTGGGGCATGGAGGGTCTGGCACAGTGTACAAGATTGAGCTGAGAAGCGGTGATATTGTTGCAGTCAAGAGGCTTTGGAGTAGAAAATCCAAGGATTCAACTCCAGAGGATCGGTTGTTTGTGGACAAGGCATTGAAAGCTGAGGTGGAGACACTGGGGAGTATAAGACACAAGAACATAGTCAAACTCTACTGCTGCTTCACCAGTTTGGACTGCAGCTTGTTGGTCTATGAATACATGCCAAATGGTACTCTATGGGATTCTCTGCACAAAGGTTGGGTCCTTTTGGATTGGCCTACTCGTTATAGAATTGCACTGGGGATTGCACAGGGTCTAGCATACCTCCACCATGATTTGGTTTTTCCCATCATTCATAGAGATATCAAGTCAACTAACATCCTATTGGATGTTGATTACCAGCCCAAAGTTGCAGACTTTGGGATCGCCAAGGTTTTGCAAGCAAGAAGCGGGAAGGATTCCACAACAACTGTTATTGCAGGAACATATGGTTACTTGGCCCCAGAATATGCATATTCACCAAGGCCCACCACCAAGTGTGATGTGTACAGTTTTGGGGTGATTTTGATGGAGTTGTTGACTGGGAAGAAGCCTGTTGGGGCAGAATTTGGAGAGAACAGAAACATAGTCTTTTGGGTTTCAAACAAAGTAGAAGGCAAGGATGGGGCTAGACCAAGTGAGGCACTTGATCCAAGACTATCATGTTCATGGAAGGATGACATGATTAAAGTGCTGCGGATTGCCATTCGCTGCACCTACAAAGCCCCAGCTAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAGGCAGAGCCACGAAATTCTGATTCTTGCAAGTTGTCAACCAAAGATGCATCAAATGTCACTATAATAAAGAAGCCATTTGAATTGTAA 3081 0.4434 MFTIHFTHPVVLQQQEPAFSSPSLCHPKVIHSTIPSYIHLFLISTFILTTNIITSISFPSIPSSLRMSHSFFVSVIIGVIISMTSISHVMSSTNQSQFFSLMKESLSGNFPLDWDYRVGKPFCNFTGVACNSKGDVINLDFSGWSLSGNFPSDFCSYLPELRVLKLSHTRFKFPAHSIVNCSHLEVLDMNHMFQTTTLPNFSPLKSLRILDLSYNLFTGEFPMSVFNLTTLEVLNFNENQGFKFWQLPARFDRLQNLKTMVLTTCMLHGQIPASIGNMTSLIDLELSGNFLSGKIPAELGLLKNLQLLELYYNYHLVGNIPEELGNLTELIDLDMSVNKLTGTIPESICRLPKLQVLQLYNNSLSGEIPGAIENSTALSTLSLYDNFLGGHIPKKLGQFSGMVVLDLSENRLTGPLPTEVCKGGKLQYFLVLDNMFSGEIPESYANCMQLLRFRVSNNRLEGTVPKGLLGLPYVSIIDLSSNNLTGPIPEINGNSRNLSELFLQRNKISGLIPHTISRAFSLVKIDFSYNLLSGPIPSEIGNLGRLNLLMLQGNKLSSSIPSSLSSLKSLNLLDLSNNLLTGTIPESLAVLLPNSINFSQNLLSGPIPPKLIKGGLIESFSGNPGLCVLPVYANSSDQKFPLCSHANKSKRINTIWVAGVSVVLIFIGAVLFLKRRCSKDTAVMEHEDTLSSSFFSYDVKSFHKVTFDQREIVESMVDKNILGHGGSGTVYKIELRSGDIVAVKRLWSRKSKDSTPEDRLFVDKALKAEVETLGSIRHKNIVKLYCCFTSLDCSLLVYEYMPNGTLWDSLHKGWVLLDWPTRYRIALGIAQGLAYLHHDLVFPIIHRDIKSTNILLDVDYQPKVADFGIAKVLQARSGKDSTTTVIAGTYGYLAPEYAYSPRPTTKCDVYSFGVILMELLTGKKPVGAEFGENRNIVFWVSNKVEGKDGARPSEALDPRLSCSWKDDMIKVLRIAIRCTYKAPASRPTMKEVVQLLIEAEPRNSDSCKLSTKDASNVTIIKKPFEL* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3653 1026 Gene3D Transferase(Phosphotransferase) domain 1 801 1021 - -
Lja1g3653 1026 SUPERFAMILY Protein kinase-like (PK-like) 703 996 IPR011009 -
Lja1g3653 1026 ProSiteProfiles Protein kinase domain profile. 716 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3653 1026 ProSitePatterns Protein kinases ATP-binding region signature. 722 744 IPR017441 GO:0005524
Lja1g3653 1026 SMART LRR_typ_2 567 591 IPR003591 -
Lja1g3653 1026 SMART LRR_typ_2 204 228 IPR003591 -
Lja1g3653 1026 SMART LRR_typ_2 351 375 IPR003591 -
Lja1g3653 1026 SMART LRR_typ_2 543 566 IPR003591 -
Lja1g3653 1026 SMART LRR_typ_2 399 423 IPR003591 -
Lja1g3653 1026 SMART LRR_typ_2 158 181 IPR003591 -
Lja1g3653 1026 SMART LRR_typ_2 278 302 IPR003591 -
Lja1g3653 1026 SUPERFAMILY RNI-like 137 414 - -
Lja1g3653 1026 Gene3D Phosphorylase Kinase; domain 1 699 800 - -
Lja1g3653 1026 Pfam Protein kinase domain 718 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3653 1026 SMART serkin_6 716 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3653 1026 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 70 1008 - -
Lja1g3653 1026 Gene3D Ribonuclease Inhibitor 245 348 IPR032675 -
Lja1g3653 1026 Gene3D Ribonuclease Inhibitor 96 244 IPR032675 -
Lja1g3653 1026 SUPERFAMILY L domain-like 315 635 - -
Lja1g3653 1026 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 70 1008 - -
Lja1g3653 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Lja1g3653 1026 Gene3D Ribonuclease Inhibitor 357 638 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3653 Lja-Chr1 45528293 45532160 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3653 89 1002 Receptor kinase-like Gene Family AT5G49660 64.635 0.0 1207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g3653 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3653 - - lja:Lj1g3v2096140.1 1976.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3653 1 45528293 45532160 Lja1g3653 1 45528293 45532160 ECH