Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3640 ATGGAGCTCTATGACCAGGATTTCTTGGACGAATTAATGGCCCTGAGAAGAGAAACATGGGAAACCAATCCAAACACAGAAGAAAACCAGTTCTTCTCCAATGGCTTCAGTTTTGACAGTTTTGATCAAAACTCTCTTGGCTATCTCCCAAACTCTTCTCAAGTTCCCCAAAGTTACAACAATGACTACACCTTCAATGAAATTTATGGCTCCTTACTTGAAGAATCCTCATCCTCAGCACCACCACAGGTTATGGATTCATACTATAATTATTCCCTTGATACTCCCTTTAATATCCCTCCATGTCCTTTACCAAAAGACTTTCCATTGTCCATGATGGAAGAAGAGGATCCAGGTTTGCTTGGGGAAGAGCTTCAGAACATGGAGCTGCAAACCACTTGCAAAATGGAGCCAGCAACACAGTCCCCTGAACCTGAAATGCCAGTTTTCAACATGGGTGGTGTCGGTCTGGAAAGAAAGAATAGAGCAAAGAAGGTGCAGGGACAACCCTCAAAGAATCTAATGGCAGAGAGGAGAAGAAGAAAGAGGCTAAACGATCGCCTATCGATGCTAAGAGCAATTGTCCCCAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAGCTTTTGGATAAGATCAACAATCTGCAACAAGAAGTAGAAGTAGATTCAAATATGGCAGGCATTTTCAAAGATGTAAAGCCAAATGAAATCCTAGTGAGAAATTCACCTAAGTTTGAGGTGGAGAGGAATGTTGACACCCGGGTCGAAATTTGTTGTGCAGGCAAGCCAGGCTTGTTGCTATCAACAGTAAACACCCTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTCATTAGTTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCGGAGGAATTGGAGAGAAGGACAACACTTAGTTCAGAAGATATTAAGCAAGCACTATTTAGAAGTGCTGGTTATGGAGGAAGATGTTTGTGA 1011 0.4174 MELYDQDFLDELMALRRETWETNPNTEENQFFSNGFSFDSFDQNSLGYLPNSSQVPQSYNNDYTFNEIYGSLLEESSSSAPPQVMDSYYNYSLDTPFNIPPCPLPKDFPLSMMEEEDPGLLGEELQNMELQTTCKMEPATQSPEPEMPVFNMGGVGLERKNRAKKVQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLDKINNLQQEVEVDSNMAGIFKDVKPNEILVRNSPKFEVERNVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELERRTTLSSEDIKQALFRSAGYGGRCL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3640 336 MobiDBLite consensus disorder prediction 161 181 - -
Lja1g3640 336 Gene3D - 158 232 IPR036638 GO:0046983
Lja1g3640 336 CDD ACT_UUR-ACR-like 262 303 - -
Lja1g3640 336 Pfam Helix-loop-helix DNA-binding domain 174 217 IPR011598 GO:0046983
Lja1g3640 336 SMART finulus 174 223 IPR011598 GO:0046983
Lja1g3640 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 230 IPR036638 GO:0046983
Lja1g3640 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Lja1g3640 336 Coils Coil 207 234 - -
Lja1g3640 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 336 - -
Lja1g3640 336 PANTHER DNA BINDING PROTEIN 3 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3640 Lja-Chr1 45242949 45245090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3640 154 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.426 2.16e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g3640 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3640 - - gmx:100784380 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3640 1 45242949 45245090 Lja1g3640 1 45242949 45245090 ECH