Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3637 ATGGTGCTGAGGAAAGTGGGCAAGTACGAAATTGGGAGAACCATTGGGGAAGGAACCTTCGCGAAGGTGAAGTTCGCTCAGAACACTGAAACTGGCGAGAGTGTCGCCATGAAGGTGCTTGATCGCAACACCATCATCAAGCACAACATGGTCGACCAGATCAAAAGGGAGATTTCCATTATGAAGCTAGTTAGACATCCTTATGTTGTTCGTCTCTATGAGGTTCTTGCGAGCCGAACGAAAATTTATATCATATTGGAGTTCATTACTGGTGGTGAATTGTTTGATAAAATTATACGTCATGGGCGTCTTAGTGAAGCTGAGTCTAGAAGATATTTCCAGCAGTTGATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCATAGAGATTTGAAGCCGGAAAATCTTTTACTTGATTCACTTGGAAATATAAAGATTTCCGATTTTGGATTGAGCGCATTGCCTGAACAGGGAGTGAGTATCCTTCGGACAACTTGTGGGACTCCAAACTATGTAGCTCCTGAGGTACTCAGTCACAAGGGTTACAATGGTGCTGTTGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTATTGGTTGGATATCTTCCCTTTGATGAGCTCGATCTAACCTCCTTATACAGTAAGATTGAGAAAGCAGAGTATTCATGCCCTCCTGGGTTTCCCGTGGGTGCAAAAACATTGATACATAAAATTTTGGACCCAAATCCTGAAACTCGTATAACCATTGAACAAATACGAAATGATGAATGGTTTCAGAGAGGCTATGTTCCTGTCAGTCTTCTCGAGTATGAGGATGTAAATCTGGATGATGTAAATGCTGTTTTTGATGATGCCGAGGAACAGAGGGCTAATCAACAGTGTGATCATGAGGACATGGGTCCTTTAATGCTAAATGCATTTGACTTGATAATTCTATCTCAAGGCTTAAACCTTGCAGCAATCTTTGACCGTGGACAGGACTCTATGAAGTACCAAACCCGCTTTATCACTCAAAAGCCAGCAAAGGTGGTTTTGTCTAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACGCATATTCGCAACTACAAGATGAGGGTAGAGGGTCTTTCAGCGAAAAAAACTTCTCATTTCTCGGTTATGCTTGAAATTTTTGAAGTGGCTCCCACATTTTACATGGTGGACATTCAGAAAGCAGCTGGAGATGCAGGTGAATACCTCAAGTTTTACAAGAACTTTTGTGGCAATCTGGAGGATATAATCTGGAAACCGCCTCATGAATCAACCAAATCAAAGGTCTCCAAGACTAGAAGCAAAAGGCGCTCAAGATAG 1347 0.4209 MVLRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRNTIIKHNMVDQIKREISIMKLVRHPYVVRLYEVLASRTKIYIILEFITGGELFDKIIRHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLVGYLPFDELDLTSLYSKIEKAEYSCPPGFPVGAKTLIHKILDPNPETRITIEQIRNDEWFQRGYVPVSLLEYEDVNLDDVNAVFDDAEEQRANQQCDHEDMGPLMLNAFDLIILSQGLNLAAIFDRGQDSMKYQTRFITQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGLSAKKTSHFSVMLEIFEVAPTFYMVDIQKAAGDAGEYLKFYKNFCGNLEDIIWKPPHESTKSKVSKTRSKRRSR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3637 448 PANTHER - 2 443 - -
Lja1g3637 448 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Lja1g3637 448 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3637 448 CDD CIPK_C 309 419 - -
Lja1g3637 448 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3637 448 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Lja1g3637 448 Gene3D Transferase(Phosphotransferase) domain 1 4 306 - -
Lja1g3637 448 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Lja1g3637 448 Coils Coil 279 299 - -
Lja1g3637 448 Pfam NAF domain 305 363 IPR004041 GO:0007165
Lja1g3637 448 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3637 448 SUPERFAMILY Protein kinase-like (PK-like) 6 278 IPR011009 -
Lja1g3637 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Lja1g3637 448 Gene3D Kinase associated domain 1, KA1 307 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3637 Lja-Chr1 45175358 45180252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3637 1 388 CBL-interacting serine-threonine protein kinases AT4G24400 82.474 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja1g3637 Pkinase 8e-72 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3637 1 45175358 45180252 Lja1g3637 1 45175358 45180252 ECH