Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3632 ATGGAGTTCGTTAATCACTTCATGTTCTTGATGTTGCAATTCATCATTGTTCTGGCTTATGCTACCAATCCAGGGGTTCGATTGGATATTCAAGAAAAACATGTGGTGATGGACAATGGCATAGTCCAGGTAACCTTATCCAATCCTGAAGGAATTGTCACCGGAATTCAATACAATGGGGTGGACAATTTGCTGGAAGTTCTTAACCCTGAAGCTGACAGAGGGTACTGGGACATTGTTTGGGACCAGGGTGGGAATAAAACAACGAAAAAAGGAAAAAAGGGAAAAGGTAAATTTGACAGAATGGAAGCTACAAATTTCACTGTGATTGTGGCAAATGAAGAACAAGTGGAAATATCTTTTACCAGAATGTGGAATTTCTCTCTTGAGGGGAAGCTTGCTCCACTCAATATTGATAAAAGGTTTATAATGCTTAGTGGTTCATCTGGGTTCTATACCTATGCCATTTACGAGCATTTGAAGGAATGGCCTGCATTTGATCTTGACAATACAAGGGTTGCATTCAAACTTAGGAAAGACAAGTTCAATTACATGGTTATAGCAGACGATAGGCAAAGATTTATGCCTCTGCCAGATGATCGGTCACCGGAAAGAGGTCAAGTTCTGGCTTATCCAGAGGCTGTTCTGCTTGTTGATCCAGTGGAGCCGGAGTTCAAGGGGGAGGTGGATGACAAGTATGAGTACTCATGTGAGAGCAGACACAACAGTGTTCATGGCTGGATTTCCATCGATCCATTGGACTCCATTGGATGCTGGCTTATTACACCCAGCCTAGAGTTCCGATCTGCTGGGCCACTCAAGCAGTACCTTGCTTCCCATGTGGGCCCAACCATGCTCTCTGTTTTTCATAGCACTCATTATTCAGGGGCAGATCTGATAATGAAATTTGGACCCAATGAGCCTTGGAAGAAAGTATATGGGCCCATATTCATATACCTTAATTCCCTCTCTAATGGGTTCAGCCCAATCATTCTCTGGGAGGATGCCAAACAACAGACGGTGAATGAAATTGAAAGCTGGCCCTATACATTTCCAGCTTCTGAGGACTTTCTCTCGTCTGATCAACGGGGTAAAGTTGAAGGAAGATTGCTTGTCCGAGACAGGTACATTAGTGATGCATTCATCCCAGTCAGTGGTGCTTATGTGGGATTAGCAGCCACAGGAGATGCTGGATCTTGGCAAAGAGAATGCAAGGGTTATCAATTTTGGACTGTGACTGATGATAAAGGCTATTTCTCAATTATTGACATTCTTCCTGGGGACTACAATCTCTATTCTTGGGTCACTGGATACATTGGTGATTATCAGTATGAGAATGTCATCAACGTAACCTCAGGTTGTGAAATTACCGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCAACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATGTCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTACCCAAATGAAGACTTAGTTTACACGGTTGGCACTAGTGACTACAGCAAAGATTGGTTTTTTGCTCAAGTTACCAGGAAGAAAGACAATAACACATACCAAGGTACCACATGGAAGATTAATTTCAATCTTGACTATGTGAATACCAGTGGAACTTACAAATTGAGACTAGCTCTGGCTTCTGTTCATGCTGCTGAGCTACAGATTCGGATAAACAACTCAGAAGCAAATCCACCTTTATTTTCTAGTGGAGTAATTGGAAAAGAGAATACCATAGCCAGACATGGAATTCATGGACTCTACTGGCTATTCAGCATTGATGTGCAAGGAACTCTTCTTGTGCAGGGGAATAATACCATCTTTCTAACCCAAACACAAAACATAAGTCCTTTTCAAGGAATTTTGTATGATTATATTCGTTTAGAAGGTCCCCCTTATGTAAATTATGAAGACAAAAACTCGACATTTTTGTGA 2028 0.4191 MEFVNHFMFLMLQFIIVLAYATNPGVRLDIQEKHVVMDNGIVQVTLSNPEGIVTGIQYNGVDNLLEVLNPEADRGYWDIVWDQGGNKTTKKGKKGKGKFDRMEATNFTVIVANEEQVEISFTRMWNFSLEGKLAPLNIDKRFIMLSGSSGFYTYAIYEHLKEWPAFDLDNTRVAFKLRKDKFNYMVIADDRQRFMPLPDDRSPERGQVLAYPEAVLLVDPVEPEFKGEVDDKYEYSCESRHNSVHGWISIDPLDSIGCWLITPSLEFRSAGPLKQYLASHVGPTMLSVFHSTHYSGADLIMKFGPNEPWKKVYGPIFIYLNSLSNGFSPIILWEDAKQQTVNEIESWPYTFPASEDFLSSDQRGKVEGRLLVRDRYISDAFIPVSGAYVGLAATGDAGSWQRECKGYQFWTVTDDKGYFSIIDILPGDYNLYSWVTGYIGDYQYENVINVTSGCEITVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYVNKLYVNHPDKFRQYGLWERYADLYPNEDLVYTVGTSDYSKDWFFAQVTRKKDNNTYQGTTWKINFNLDYVNTSGTYKLRLALASVHAAELQIRINNSEANPPLFSSGVIGKENTIARHGIHGLYWLFSIDVQGTLLVQGNNTIFLTQTQNISPFQGILYDYIRLEGPPYVNYEDKNSTFL* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3632 675 CDD RGL4_N 34 322 - -
Lja1g3632 675 SUPERFAMILY Starch-binding domain-like 361 459 IPR013784 GO:0030246
Lja1g3632 675 SUPERFAMILY Galactose-binding domain-like 468 660 IPR008979 -
Lja1g3632 675 Pfam Rhamnogalacturonate lyase family 21 229 IPR010325 -
Lja1g3632 675 Gene3D - 469 660 - -
Lja1g3632 675 Gene3D - 359 459 - -
Lja1g3632 675 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 661 - -
Lja1g3632 675 CDD RGL4_C 473 660 - -
Lja1g3632 675 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 661 - -
Lja1g3632 675 Gene3D - 27 309 IPR014718 GO:0030246
Lja1g3632 675 Pfam Polysaccharide lyase family 4, domain II 385 457 IPR029413 -
Lja1g3632 675 CDD RGL4_M 362 461 IPR029413 -
Lja1g3632 675 Pfam Polysaccharide lyase family 4, domain III 471 659 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3632 Lja-Chr1 45131286 45136245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3632 26 662 Polysaccharide Lyase AT1G09890 65.000 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3632 K18195 - gmx:100786488 1184.09