Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3631 ATGGCTGCTCCAGGGGTACGGTTGCACATACTAGAGAACCATGTGGTGATGGATAATGGCATAGTCCAAGTTACGTTGTCAAATCCTGATGGAATCGTCACTGGTATACGATATAATGGTGTTGATAATTTACTTGAAGTTCTCAACAAGGAATCTAATAGAGGGTACTGGGATCTTGTTTGGAGCGCACCGGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTGTAGTTCAAAACGAGGAACAGCTGGAGCTTTCATTCACCAGAATGTGGGATCCTTCTCTCGAGGGAAAGTTTGTGCCCTTAAATATTGACAAAAGATTCATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCGGATTTTGATCTTGGTGAAACTAGGATCACTTTCAAGCTTAGAAAAGAAAAGTTTCAATACATGGCTATGGCCGACAATAGGAAAAGGATTATGCCTTTCCCGGAGGACCGGTTACCAGGAAAGTGCCAAACCTTGGCCTACCCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCACGACTGAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGAAAACATAGATAATCGAGTCCATGGGTGGATATCATTCAGTCCACCTGTAGGATTCTGGCAGATTACTCCTAGTGATGAGTTTCGTTCTGGTGGGCCTCTCAAACAGAATCTGACCTCACATGTAGGACCCACCACACTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATTTGGTGCCCAAAATTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTCAATTCTGGATCAATTGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAATTGGCCATATTATTTCCCTGCTTCAGAGGATTTTCCAAAGGCAGATCAACGGGGCAACGTCAGTGGCAGATTACTTGTATTAGACAGGTACATCAGCACCGACTTAATATCAGCAAATGGTGCTTATGTTGGTCTCGCCCCACCAGGAGATGCAGGCTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACGATAATGGATTTTTCACAATTAGCAATATACGTGCAGGCGACTACAACCTTTTTGCTTGGGTACCGGGTTTTATTGGGGACTATAGATGTGATGATTTTATGAAGATAACTTCAGGATCTTATATTGAATTGGGTGAACTTATATATGAGCCTCCAAGAGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCTGCTGCAGAATTTTACGTTCCTGATCCCAATCCACAATATATTAATAAGCTTTTTATCGGTCATCCAGACAGATTCAGGCAGTATGGATTGTGGGACAGATATACAGAATTGTATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATAGGAAGGATTGGTTTTTTGCTCAGGCTCCCAGAAAAGGAGGGGACAACACTCTTCAAGGAACAACTTGGCAAATCAAGTTTGAAGTTGGTAGTGTGGTCCAGGGAAGTACATATAAACTGAGAGTTGCACTTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGATCCCAATGCAAGACGTCCCGTATTTACCACTGGATTAATAGGAAGGGAAAACTCAATTGCAAGACACGGAGTTCGTGGACTCTATTGGCTGTACCATGTGAATATACCAAGCTCTCTTCTTATTGGTGGCACGAATACTATGTATTTTACGCAGCCAAGATGTACCAGTCCCTTCCAGGGCATCATGTATGATTATATTCACCTTCATTGTGCACATATCTGGTTTACTGCTACTACAACCATGCCACCTCTTGGGGTGCAACTCAGTATTCAAGATCGTCATGTGGTGATGGACAATGGCATACTACAAGTCACATTGTCCAATCCTGAGGGAATTGTGACTGGAATTCAGTACAATAGCATTGACAACTTGCTTGAAGTTTTGAATGACGAATCTAACAGAGGATATTGGGACCTTGTTTGGAGCTCACCAACCAGTACAGGAACCACCGGTAGATTTGATGTGATAAAGGGAACCACTTTCAAAGTTATAGTGGAAAATGAGGACCAAGTTGAGGTATCCTTCACTAGGATGTGGGATGCTTCCCTTGAGGGCAAGTTGGTTCCTTTGAATATTGATAAGAGGTTCATAATGCTTCGTGGTTGTTCTGGCTTCTACTCGTATGCAATTTATGAGCACTTGGAGGATTGGCCTGCTTTCAATCTTGACGAAACAAGAATAGCTTTCAAGCTTAGAAAAGAGAAGTTCCATTATATGGCAATGGCAGATAATAGACAAAGAGACATGCCTCTTCCAGATGACAGAGTACCACCTAAAGGCCAACCACTTGCATATCCAGAAGCAGTTCTACTTGTCAACCCTATTGAACCAGAACTAAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGATAACAAAGATAGCCAAGTTCATGGATGGATTTGCAAGGATCCGGGTGTCGGATTCTGGCTAATTACGCCTAGCAATGAGTTTCGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCACGTTGGACCTACCACGCTTGCTGTGTTTCTAAGCGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTTATCTATTTAAATTCTACTGATGATGGAAGTGCCGTCCCTAATCTATGGGACGATGCTAAACTGCAGATGTTGGTGGAAGTCCAAAGCTGGCCCTACAGTTTTCCTGATTCAGATGATTTCTCAAAGTGGGATGAACGTGGTAATGTTAGTGGCAGACTTTTGGTTAGAGACAGGTATATAGACGATGACTACATATCAGCGAAAGGTGCCTACGTTGGCTTGGCTCCACCTGGAGAAGTGGGATCTTGGCAAAGAGAATGCAAGAATTACCAGTTTTGGGCTAAAGCAGATGATGATGGCTATTTCACCATCAGCAATATTCGTGTTGGCGACTATAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTGACTATGACCATAACAGAAGTTTGTGACATAGACATTGGGGATCTTGTATATGAGCCACCAAGAGATGGTCCCACATTGTGGGAAATAGGCATCCCTGATCGCTCTGCTGCCGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACAAAGACTTGATCTACACTGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAATACTTATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAATGTGAACAAAAGCAGTATTTATAAACTTCGAGTGGCTTTGGCATCAGCCACATTTTCTGAACTTCAGGTTCGAGTTAATGATCCAAAAGCAAATCGTCCTCTATTTTCAAGTGGATTGATTGGAAGGGATAACTCAATCGCTAGACATGGAATTCATGGCCTTTATTGGCTTTACAATGTGGACATACCAGGCACTCGACTTGTAGAAGGAGATAACACCATCTTCTTGACACAGACAAGAGGCAATGGCCCATTTCAAGCTATTATGTATGATTATATTCGTTTGGAAGGTCCATCTGAGTCTAGTTTCAATAAGAAAAATTAA 3852 0.4198 MAAPGVRLHILENHVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVIKGTCFKVVVQNEEQLELSFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLGETRITFKLRKEKFQYMAMADNRKRIMPFPEDRLPGKCQTLAYPEAVLLVNPKDPRLKGEVDDKYQYSCENIDNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKIRGGEPWKKVFGPVYIYLNSGSIGDDPLWLWEDAKIQMMNEVQNWPYYFPASEDFPKADQRGNVSGRLLVLDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADDNGFFTISNIRAGDYNLFAWVPGFIGDYRCDDFMKITSGSYIELGELIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQYINKLFIGHPDRFRQYGLWDRYTELYPDADLVYTIGVSDYRKDWFFAQAPRKGGDNTLQGTTWQIKFEVGSVVQGSTYKLRVALASATLAELQIRINDPNARRPVFTTGLIGRENSIARHGVRGLYWLYHVNIPSSLLIGGTNTMYFTQPRCTSPFQGIMYDYIHLHCAHIWFTATTTMPPLGVQLSIQDRHVVMDNGILQVTLSNPEGIVTGIQYNSIDNLLEVLNDESNRGYWDLVWSSPTSTGTTGRFDVIKGTTFKVIVENEDQVEVSFTRMWDASLEGKLVPLNIDKRFIMLRGCSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKEKFHYMAMADNRQRDMPLPDDRVPPKGQPLAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICKDPGVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSTDDGSAVPNLWDDAKLQMLVEVQSWPYSFPDSDDFSKWDERGNVSGRLLVRDRYIDDDYISAKGAYVGLAPPGEVGSWQRECKNYQFWAKADDDGYFTISNIRVGDYNVYAWVPGFIGDYKYDVTMTITEVCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKSSIYKLRVALASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPGTRLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEGPSESSFNKKN* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3631 1283 CDD RGL4_C 442 628 - -
Lja1g3631 1283 CDD RGL4_M 331 430 IPR029413 -
Lja1g3631 1283 CDD RGL4_N 13 293 - -
Lja1g3631 1283 Pfam Rhamnogalacturonate lyase family 644 843 IPR010325 -
Lja1g3631 1283 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Lja1g3631 1283 Pfam Polysaccharide lyase family 4, domain II 997 1067 IPR029413 -
Lja1g3631 1283 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Lja1g3631 1283 SUPERFAMILY Starch-binding domain-like 1017 1070 IPR013784 GO:0030246
Lja1g3631 1283 SUPERFAMILY Galactose-binding domain-like 437 628 IPR008979 -
Lja1g3631 1283 SUPERFAMILY Galactose-binding domain-like 1080 1272 IPR008979 -
Lja1g3631 1283 SUPERFAMILY Galactose mutarotase-like 651 936 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lja1g3631 1283 CDD RGL4_C 1085 1272 - -
Lja1g3631 1283 Gene3D - 11 304 IPR014718 GO:0030246
Lja1g3631 1283 Gene3D - 645 950 IPR014718 GO:0030246
Lja1g3631 1283 SUPERFAMILY Starch-binding domain-like 331 410 IPR013784 GO:0030246
Lja1g3631 1283 Gene3D - 1081 1272 - -
Lja1g3631 1283 Gene3D - 438 629 - -
Lja1g3631 1283 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 636 1277 - -
Lja1g3631 1283 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lja1g3631 1283 CDD RGL4_N 648 937 - -
Lja1g3631 1283 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 630 - -
Lja1g3631 1283 CDD RGL4_M 974 1073 IPR029413 -
Lja1g3631 1283 Gene3D - 973 1069 - -
Lja1g3631 1283 Gene3D - 328 416 - -
Lja1g3631 1283 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 630 - -
Lja1g3631 1283 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Lja1g3631 1283 Pfam Polysaccharide lyase family 4, domain III 1083 1271 IPR029411 -
Lja1g3631 1283 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 636 1277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3631 Lja-Chr1 45098458 45108322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3631 1 630 Polysaccharide Lyase AT1G09890 68.196 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3631 K18195 - gmx:100793563 1243.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3631 1 45098458 45108322 Lja1g3631 1 45098458 45108322 ECH