Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3629 ATGATCACAACACTTACACTTCTACTAATCCTTCTGGTTTTAGCATCATCATCATCAATTTTTCTTCCCAAAATCACTGCCCAAGTGAACCACCGTGAGTGCCACCGAACATGCGGTTCAGCAAAACCGTTCCCTTACCCGTTCGGCTTCTCCTCCGGCTGCGAAATCCGCCTCAACTGCACCCCCGACGGCGGAGTCTTCATCGGAGAATTCCCCGTCAAATCGGTGAACGCAGACAGCATAATCATGACCATAGAAGCGCAGTGCAACCGCCCCTTTGCTAGCTTCTACCAACTCTTCAGCCACAAATACGCACCCACTTCAGGAAACGTGATTCTCCTGCAGAATTGCACGGTGACGCTCTTGCCCTGTTCCATACCGGAGACTCTGCTTCAGGCTCATCTACAATCTGATGAAGGTTGTAGCGGCGGCGGAAACTTGAGCTGCTACTTCGAGAACAGCACGACGGGTTTCGTTAGTGATGGAATATTGGAACGAATCGGGTGCGAGTATTTTGCGTCGTCGATTTCGTCGGAGAATTTGAGAAATGTTTCCGGTGAGGCGGTGTCGTTGGAGGTTGGTGAAATTGAGCTTGGGTGGTGGCTTCATGGAGATCAATGTCTGTGTTCTGATCATGCCAATTGTACCCAAATTTTGTCGCCGCGTGATAGAAAACCAGGGTTCCGGTGTCGCTGCCATGAAGGGTTCGTCGGAGATGGGTTTTTGGCCGGAGCAGGCTGCCGGAAAGCCTCATCATCAACATGCACCCCAGCAAAGTACCTGTCTGGTCGATGTGGAGGAACAGCAAGATTGGTTGTCTTAATTGGAGCCTTTGTTGGTGGTGCTTCACTCATGGTTACTCTAGTCTCACTATGTTGCTTCTTCCGCCGCCGCACCAAGTTAAGGATCACAAAGAGCACAAAACGGCGCTTCACCGAAGCCACGGGCAATTACAGCGTCCCAATCTATCCCTACAAAGACATTGAAAAAGCCACCAACAGTTTCTCAGAGAAACAGAGGCTTGGAACAGGGGCATACGGCACCGTCTACGCCGGAAAGCTTCACAGCGATGAATGGGTTGCCATCAAAAGAATCAAACACAGAGACAACGAGAGCATTGAGCAAGTCATGAACGAGATCAAGCTTCTTTCCTCAGTAAGCCACAGCAATTTGGTTCGCTTGTTAGGTTGCTCCATTGATTATGCAGAACAAGAACAAATCCTTGTCTACGAGTTCATGCCAAATGGAACATTAAGTCAGCATTTGCAAAGAGAAAGAGGGAACGGGCTTCAATGGGAAATTCGACTCAGAATTGCAACAGAAACAGCACAAGCCATAGCTTATCTTCATTCAACAAACCCTCCAATTTTCCACAGAGATATTAAATCAAGCAACATACTGTTGGACCAGAATTTCAGGTCTAAGGTTGCTGATTTTGGGCTTTCTAGACTTGGAATGACAGAGACAGAAACAATCATGTCTCACATTTCAACTGCACCACAGGGAACCCCTGGTTATGTTGATCCACAATACCACCAAGATTTTCAGCTTTCTGATAGGAGTGATGTTTACAGTTTTGGTGTTGTTCTTGTTGAGATGATAACAGGGCTAAGAGCTGTGGACTTTTCTCGTCCTCAGAATGAGGTGAATCTGGCTTCTCTTGCTGTGGACAGGATCAGAAAAGGGGTTTTGTGTGAGATCATTGACCCGTTAATCCTTGAATCTGAATCAAGCAATGATGAAAATGAAAGCACAGTTTGTTCTATACACAAGGTTGCTGAGGTTGCATTCAGGTGCCTTGCGTTTCACAGGGATATGAGGCCTTCCATGGCGGAAGTTGCTAGTGAGTTAGAGCAGGTGAGGTTGATGACAGGTTTTGGAGAAAACATTAACAATTGTAGAGGTTCATCGGAATTGTGTTCTGGTTCTTGTTCCTCTAGTGAAAGTGAGAAGCCACTGAGTGCAGCAGTGAAGAAGGTTGAGCCAAAGGGTGAATGTTATCTTCAGGTGCAAAGTGGAAGAACCGTTGCTTTGAAGTTGATGGAAAGAGCTGATAGTAGCTCGCCGGTGTCGGTTCAGGACCCGGATCCATGGTTGAGTGAACAGAGCTCTGCTTCGACGAGTAGTTTTCCCAGCAAGTCATTTGATTGA 2151 0.4714 MITTLTLLLILLVLASSSSIFLPKITAQVNHRECHRTCGSAKPFPYPFGFSSGCEIRLNCTPDGGVFIGEFPVKSVNADSIIMTIEAQCNRPFASFYQLFSHKYAPTSGNVILLQNCTVTLLPCSIPETLLQAHLQSDEGCSGGGNLSCYFENSTTGFVSDGILERIGCEYFASSISSENLRNVSGEAVSLEVGEIELGWWLHGDQCLCSDHANCTQILSPRDRKPGFRCRCHEGFVGDGFLAGAGCRKASSSTCTPAKYLSGRCGGTARLVVLIGAFVGGASLMVTLVSLCCFFRRRTKLRITKSTKRRFTEATGNYSVPIYPYKDIEKATNSFSEKQRLGTGAYGTVYAGKLHSDEWVAIKRIKHRDNESIEQVMNEIKLLSSVSHSNLVRLLGCSIDYAEQEQILVYEFMPNGTLSQHLQRERGNGLQWEIRLRIATETAQAIAYLHSTNPPIFHRDIKSSNILLDQNFRSKVADFGLSRLGMTETETIMSHISTAPQGTPGYVDPQYHQDFQLSDRSDVYSFGVVLVEMITGLRAVDFSRPQNEVNLASLAVDRIRKGVLCEIIDPLILESESSNDENESTVCSIHKVAEVAFRCLAFHRDMRPSMAEVASELEQVRLMTGFGENINNCRGSSELCSGSCSSSESEKPLSAAVKKVEPKGECYLQVQSGRTVALKLMERADSSSPVSVQDPDPWLSEQSSASTSSFPSKSFD* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3629 716 Gene3D Laminin 208 242 - -
Lja1g3629 716 Gene3D Phosphorylase Kinase; domain 1 296 412 - -
Lja1g3629 716 SUPERFAMILY Protein kinase-like (PK-like) 312 618 IPR011009 -
Lja1g3629 716 MobiDBLite consensus disorder prediction 683 716 - -
Lja1g3629 716 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 24 658 - -
Lja1g3629 716 MobiDBLite consensus disorder prediction 686 716 - -
Lja1g3629 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Lja1g3629 716 Pfam Protein kinase domain 335 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3629 716 Gene3D Transferase(Phosphotransferase) domain 1 413 630 - -
Lja1g3629 716 SMART serkin_6 335 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3629 716 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 658 IPR045274 GO:0007166
Lja1g3629 716 ProSiteProfiles Protein kinase domain profile. 335 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3629 716 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3629 Lja-Chr1 45071659 45079039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3629 1 710 Receptor kinase-like Gene Family AT2G23450 48.611 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja1g3629 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3629 - - mtr:MTR_3g111510 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3629 1 45071659 45079039 Lja1g3629 1 45071659 45079039 ECH