Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3613 ATGCAATCTGAACCAGGACCAAAACCGCCATTAGTGTTGTTCTTGCTCATCCTGTCACTCTTTTTGCTCCTGAATTCTTGTAATGCAGCAAAAGCTACCAAAAACATCACCTATCAATTCAGAGAAGCCCCTGAATTCTACAACTCACCAGACTGCGCCACTATTGCCGACACCAATGAGGAAGAAGAAAGCAACACCGACAGTGATAGGTACATATGCTCCGATGAAGCAGTGCACGTTGCAATGACCCTCGACACCACCTACCTCCGGGGATCCATGGCGGCGATCCTGTCGGTTCTCCAACACTCTTCCTGCCCTCAAAACACCTTCTTCCACTTCGTCTGCTCCTCCGGCGCGTCCCTCCTACGCGCCGCCATCTCCTCCTCATTCCCTTACCTCAAATTCCATGTCTACACCTTCGACGACACGGTCGTCTCAGGCCTAATCTCCACCTCCATCCGCTCCGCACTCGATTGCCCTCTCAACTACGCGCGAAGCTACTTGGCCAACCTCCTACCGCTTTGTGTCCGGCGCGTGGTGTACCTAGACTCCGACCTCATTCTCGTCGACGACATTGCGAAATTAGCTGCAACACCATTGAAGGAAAACATTGTTTTAGCAGCACCTGAATACTGTAATGCCAATTTCACCTCCTACTTCACTCCAACATTCTGGTCTAACCCTTCTCTGTCTCTGACTTTTGCAAACAGAGTACCCTGTTATTTCAATACAGGGGTGATGGTGATTGATTTAGAGCGTTGGCGAAGTGGGGATTACACAACGAAGATTGAGGAGTGGATGGAGCTTCAGAAGAGAGTGAGAATCTACGAGCTGGGTTCTCTGCCGCCGTTTTTGCTTGTGTTTGCAGGGAACATTGCAACCGTGGATCATAGGTGGAACCAGCATGGTCTTGGAGGTGATAACTTTCGTGGTCTGTGCAGAGATCTTCACCCTGGTCCGGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGTGAGGTTGGATGCTAATAGGCCTTGTCCTTTGGATGCACTTTGGGCACCCTATGATCTGTTAAAGACTCCATTTTCTCTGGATTCTTGA 1089 0.4995 MQSEPGPKPPLVLFLLILSLFLLLNSCNAAKATKNITYQFREAPEFYNSPDCATIADTNEEEESNTDSDRYICSDEAVHVAMTLDTTYLRGSMAAILSVLQHSSCPQNTFFHFVCSSGASLLRAAISSSFPYLKFHVYTFDDTVVSGLISTSIRSALDCPLNYARSYLANLLPLCVRRVVYLDSDLILVDDIAKLAATPLKENIVLAAPEYCNANFTSYFTPTFWSNPSLSLTFANRVPCYFNTGVMVIDLERWRSGDYTTKIEEWMELQKRVRIYELGSLPPFLLVFAGNIATVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWVRLDANRPCPLDALWAPYDLLKTPFSLDS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3613 362 Pfam Glycosyl transferase family 8 79 335 IPR002495 GO:0016757
Lja1g3613 362 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 11 362 - -
Lja1g3613 362 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 79 342 IPR029044 -
Lja1g3613 362 PANTHER HEXOSYLTRANSFERASE 11 362 - -
Lja1g3613 362 SUPERFAMILY Nucleotide-diphospho-sugar transferases 78 354 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3613 Lja-Chr1 44837131 44839142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3613 14 360 Glycosyltransferase AT3G50760 69.714 6.03e-180 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3613 K20893 - gmx:100818099 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3613 1 44837131 44839142 Lja1g3613 1 44837131 44839142 ECH
Lja5g3208 5 62145359 62147342 Lja1g3613 1 44837131 44839142 PCT