Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3602 ATGGCTAGTAATAGTAAACGCTTCAAGCTGAAATTCACAATCCCTTCACTTCAAATGTGCCGATCCAAACACGACCTTAGCACTTTCCCTATAAACCCTCTTCCCGCCATTTACCGTCTTTCCCCAGTCAACCCCAAATCACACCAATCACGCCACCACCACCACCCTGCTCCGCCGCCAGCCTCACCGGAACACCACCACAGCCACCACGTGTCGTCGTCATCATCAAATTCCTCGCGCTCTCATCACAATGCAATAACCAGAGGCCGAAAAAGCACCTCAAGCGTTCCCTCGAAGAGGAGCAATTTCGCGATTGATAGCATCAATGAAGAAGAGAGCGAGTCGCTAATCTCTTGCTTAACAAGTTTCTCAGATGATTTCAGTCACGATCTTAATAAAACGGAGAATTCTAACAGAGATTTGACTAATAACTGGAAAATTAGCAGCGTGAAGAAGGTTCAGGGTGTGAGATTGGAGAATCGGATTAGGAGATTACCTGAATCGACGATGATGAAGAGATCGTCATCGTCGGCGTCGTCGTCGGTGAAAGAGAGGTTTGCGGTGGTGAAGAAGACGTCGAAGGAGCCGTACGATGACTTCAGGAAATCGATGGTAGAGATGATAACGGAGATGGAGATATCTGCGGCGGAGGATCTGGAGCAGTTATTGCAGAGTTTCCTGGCTTTGAACTCTCGGAGATATCATGAGATGATTGTGCGAGCTTTCATGGAGATCTGGCAGCAAATGTTCATTTGGAACCCTGCATCTGTGAAAAGTCTCAAGAATGGTGGTGTTAAAACGGATTTGGAAGACTAG 816 0.4718 MASNSKRFKLKFTIPSLQMCRSKHDLSTFPINPLPAIYRLSPVNPKSHQSRHHHHPAPPPASPEHHHSHHVSSSSSNSSRSHHNAITRGRKSTSSVPSKRSNFAIDSINEEESESLISCLTSFSDDFSHDLNKTENSNRDLTNNWKISSVKKVQGVRLENRIRRLPESTMMKRSSSSASSSVKERFAVVKKTSKEPYDDFRKSMVEMITEMEISAAEDLEQLLQSFLALNSRRYHEMIVRAFMEIWQQMFIWNPASVKSLKNGGVKTDLED* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3602 271 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 6 61 IPR038933 GO:0045892
Lja1g3602 271 ProSiteProfiles OVATE domain profile. 189 248 IPR006458 -
Lja1g3602 271 PANTHER TRANSCRIPTION REPRESSOR OFP7 6 61 - -
Lja1g3602 271 MobiDBLite consensus disorder prediction 72 100 - -
Lja1g3602 271 MobiDBLite consensus disorder prediction 40 100 - -
Lja1g3602 271 MobiDBLite consensus disorder prediction 57 71 - -
Lja1g3602 271 PANTHER TRANSCRIPTION REPRESSOR OFP7 57 256 - -
Lja1g3602 271 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 57 256 IPR038933 GO:0045892
Lja1g3602 271 Pfam Transcriptional repressor, ovate 193 250 IPR006458 -
Lja1g3602 271 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 189 249 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3602 Lja-Chr1 44754044 44755178 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja1g3602 Ovate 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3602 - - lja:Lj5g3v2297890.1 451.825