Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3590 ATGGGTTGGACACGAGAGGAGAACAGGCGTTTTGAGGATGCTCTTGCTGTGTATGGACCGGAGGACCCCAACCGGTGGCAACACGTGGCCAACGCCGTTGGTGGAAAATCTGTAGATGAAGTGAAAAGGCAATATGAGGTCCTGAAGGAGGATGTCAAACGTATTGAGCGTGATCAAGTCCCGTTTCCCAGGTACAGAGGTTCTGCAAGTGGCATCAATGAACACAGCAGGCGGTTGAAGAATCTAAATGTGCAGTGA 258 0.5078 MGWTREENRRFEDALAVYGPEDPNRWQHVANAVGGKSVDEVKRQYEVLKEDVKRIERDQVPFPRYRGSASGINEHSRRLKNLNVQ* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3590 85 CDD SANT 3 49 IPR001005 -
Lja1g3590 85 Gene3D - 1 62 - -
Lja1g3590 85 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Lja1g3590 85 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Lja1g3590 85 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 66 IPR044636 GO:0003700
Lja1g3590 85 SMART sant 3 51 IPR001005 -
Lja1g3590 85 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 66 - -
Lja1g3590 85 Pfam Myb-like DNA-binding domain 3 47 IPR001005 -
Lja1g3590 85 SUPERFAMILY Homeodomain-like 2 56 IPR009057 -
Lja1g3590 85 Coils Coil 38 58 - -
Lja1g3590 85 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3590 Lja-Chr1 44643740 44645050 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g3590 Myb_DNA-binding 3.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3590 - - gmx:100786029 134.035