Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3572 ATGGGAGACGGCACCTCCGGGAGCCGTAGCAGCGGCAGCAACAAGCCGGAGTGGCTGCAGCAGTATGATCTGATAGGGAAGATCGGAGAAGGAACCTACGGTCTCGTCTTCCTCGCTCGGATCAAGTCTCAAACCAATCGCGGAAAATCCATCGCCATCAAGAAATTCAAGCAATCCAAGGATGGCGACGGTGTTTCTCCCACCGCCATTCGTGAAATCATGTTACTGAGGGAGATAACACACGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATACTGACATGTCTCTGTATCTAGCTTTCGATTACGCCGAACATGACCTTTATGAAATAATAAGACATCATAGAGACAAGGTTAACCAATCCATTAACCAGTACACGGTTAAATCGTTACTATGGCAGTTGCTCAATGGACTAAACTATCTGCACAGTAATTGGATTATACATCGAGATTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTATTAAAATTGCTGACTTTGGACTTGCGAGGATATATCAAGCCCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCGCCTGAGTTGCTTCTTGGAGCGAAACATTACACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCCACACCTAATCCTTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTACCAAATCTTCCCCATTGGCAACAAGATACGCAACATATACAAGCGCACAAATATGACAATGCTAGCCTCAATGGTGTTGTACACTTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATGGATCCACAACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGACATTTGTGAATTATCCCACACGTCCAGTGGACACAACAATGAGAAGTTATGGAATGTGGAAATCTCAACTGAAGCTTGGAATATATTTGCGTATGGAAACAGCTGGCCTTTAG 1164 0.439 MGDGTSGSRSSGSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSQTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVIKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLPNLPHWQQDTQHIQAHKYDNASLNGVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKMDPQPGRNALVPCQPGETFVNYPTRPVDTTMRSYGMWKSQLKLGIYLRMETAGL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3572 387 Gene3D Phosphorylase Kinase; domain 1 9 103 - -
Lja1g3572 387 Pfam Protein kinase domain 22 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3572 387 PANTHER CYCLIN-DEPENDENT KINASE E-1 11 364 - -
Lja1g3572 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Lja1g3572 387 SUPERFAMILY Protein kinase-like (PK-like) 17 334 IPR011009 -
Lja1g3572 387 CDD STKc_CDK8_like 21 332 - -
Lja1g3572 387 ProSitePatterns Protein kinases ATP-binding region signature. 28 55 IPR017441 GO:0005524
Lja1g3572 387 ProSiteProfiles Protein kinase domain profile. 22 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3572 387 PANTHER CELL DIVISION PROTEIN KINASE 11 364 - -
Lja1g3572 387 Gene3D Transferase(Phosphotransferase) domain 1 104 347 - -
Lja1g3572 387 SMART serkin_6 22 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3572 Lja-Chr1 44444503 44453747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3572 1 363 Core Cell Cycle Gene Families AT5G63610 82.514 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Lja1g3572 Pkinase 2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3572 K02208 - gmx:100813433 689.878