Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3567 ATGGAATCTACCAACAACAATCTCCAATATCATCATCCTCAACACCCTCTTGAAGCTTCTTCTTTATCACCCCCATCCTCCTATGCTCATGTTGGCGGAACCAACCATTCTTGGACGCCAAATATCACTTTGAATGCAGGTAGTAACTTCAATCAAAACTTTCAAGAAGCTGATCCCACTTCAAGAGAATCTATGATCCAAGATTTAGGTTATCATTACCAGTGGGCAAGTAAGGAAGAGATCTCAATTTTCCCCCCCAAATTCAGTGAAATACTAAACACTCCTTCCACTGCACAGATGAAGAGTGAGCAGAGAGATATGAATGAGAAAAAGCTTTTGCACAGTGCTCAAAGTTATTATCCCAATTTGAGCGGTACAACAAGTAGAGGGAACTTTAGCCAGATTTACCCAAGTATAAGTATATCACCCACTTATTCCACTTCAGTTTCAAGCTCTTTCGGTATGAGCACGCAGTCCTTAGATCTATTAACACCAACAGGATCATTCAGTGCGGGTTTGAGCCAGCATTCACAGGATGACCATGATCTTGGTGCATTCAGTGATCACAACCTTTCTTTTAGTCTTCATCATATGCAGCACCCTAATCACAGGTCCTCGTGTAGTAACACTACTAATATTCAGCAGCCTTCTTCACACTTCACCAATGGCGGAGCAGAAGCTAAGAGACCCGGCACTTTGATGGAGTCCATGGTTTGTGAATCTCAAACAGCGTCGAAGAAATCACGATTGGATTCATCACGCCCTCCATGCCCGCCACCTTTGAAGGTTAGGAAAGAAAAATTAGGAGATAGGATTGCAGCTCTTCAGCAGTTGATTGCTCCTTTTGGCAAGACGGACACAGCATCTGTACTCATGGAAGCTATTGGATACATCAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCATACATGAAGAAGCCATCACAGAACCACACTAACAGAACCATGCAAGGGGGTACAGCCACAGACGAAGCAGATGGGGAAACAACGCAAGATCTTAGAAGCCGAGGCCTCTGTCTCGTGCCATTGTCGTGCATGTCGTACATAGCAGGCGATTGCATCATCAGTGAGGTGTGGCAACAACCAAACTTTGGTAGAGCGACTTAG 1134 0.4444 MESTNNNLQYHHPQHPLEASSLSPPSSYAHVGGTNHSWTPNITLNAGSNFNQNFQEADPTSRESMIQDLGYHYQWASKEEISIFPPKFSEILNTPSTAQMKSEQRDMNEKKLLHSAQSYYPNLSGTTSRGNFSQIYPSISISPTYSTSVSSSFGMSTQSLDLLTPTGSFSAGLSQHSQDDHDLGAFSDHNLSFSLHHMQHPNHRSSCSNTTNIQQPSSHFTNGGAEAKRPGTLMESMVCESQTASKKSRLDSSRPPCPPPLKVRKEKLGDRIAALQQLIAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKKPSQNHTNRTMQGGTATDEADGETTQDLRSRGLCLVPLSCMSYIAGDCIISEVWQQPNFGRAT* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3567 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Lja1g3567 377 MobiDBLite consensus disorder prediction 314 338 - -
Lja1g3567 377 MobiDBLite consensus disorder prediction 240 259 - -
Lja1g3567 377 Gene3D - 262 325 IPR036638 GO:0046983
Lja1g3567 377 MobiDBLite consensus disorder prediction 199 222 - -
Lja1g3567 377 PANTHER OS01G0105700 PROTEIN 94 361 - -
Lja1g3567 377 CDD bHLH_AtbHLH_like 262 309 IPR045239 -
Lja1g3567 377 MobiDBLite consensus disorder prediction 199 224 - -
Lja1g3567 377 MobiDBLite consensus disorder prediction 1 34 - -
Lja1g3567 377 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 361 - -
Lja1g3567 377 MobiDBLite consensus disorder prediction 314 335 - -
Lja1g3567 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 316 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3567 Lja-Chr1 44401642 44404385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3567 87 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 45.033 1.41e-55 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3567 - - lang:109326222 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3567 1 44401642 44404385 Lja1g3567 1 44401642 44404385 ECH