Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3557 ATGTATTCAGACCAAGCCTTTTCATCAGGGTCCTATGCGGAAATGTTATCAGGAGGTTCTTTGTTACCTCATAACTATGCTGAATCTGTAGGAGGATCACAAAATGAGGAGCAAAACATGCAGTGCCAGGGCCTATCTCTTAGTCTCGGCACTGTAATGCCTTCTGCTGGATCTGTCCCTCAATTTCAATACCAGTATCCCGACACCGGTTTCTTACCACTACTGAATTCTTTTGTTCCTAACATGAAAGGAACCATGTCAATTAAAGATGATGAGACCAACCTACATAAGGAGTTGAGAAGTGCTGAAAGCATGGCATCTGTGTCTTCTGAAGGCTTTCATGACATGATCAAAAGGGAAGGTTTTTATAACCAGCACCCTTCAATCTGTTCTAATCCATGCCTTCAAGGATCACAAGGTTTTTCAAACATTGTCCAAAACTCGCGGTACCTCAAGGCGGCACAGGAGTTGCTTGATGAAGTAGTTAGTGTCCGGAAGGCTTTGAAGCAATCTGGAATGGAGAAACAAGAAAATTTCCGTGATGTTGGATTAGATGGATCCAAAGGTTCTGATGGTAAATCTACCAGTCAATCTGTGCAAATATCTTCAGGACCTAATGGTTCTTCGGCCAATCCTTCTTGTGAACTATCATCAGCAGAACGACAGAACTTATTGGATAAGAAGACAAAGCTTTTGTCAATGTTGGATGAGGTGGATAAAAGATACAGACTGTACTGCCATCAGATGCAAATTGTAGTGTCATCTTTGGATATGGTTGCTGGGTGTGGTGCAGCAGAACCATACACTACACTCGCTCTGCGAACAATTTCTCGCCATTTTCGCTGTTTACGCGATGCTATTAGTAGCCAAATTCAAGTGGCTCAAAGGAACCTTGGGGAACAAGAGGGGATACCCCGTCTCCGCTATGTGGATCAGCAGCTTAGACAACAAAAAGCCCTTCAGCAGCTTGGTGTTATGAGACAAGCTTGGAGGCCTCAGAGGGGACTCCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAGCATTTTCTTCATCCTTACCCCAAGGATTCAGAGAAAATAATGCTAGCAAGGCAAACTGGCTTGACCCGTAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATATACAAAGAAGAGATTGGTGATTCCGAGATAATGAAGTGCAATCTTTCATCAGAAAACACACTCAAAGGTAAAAGAGATGGTGTTCAAGAGTCTAACAATAAATGGGAAGAGTCACAGGACAATTCAATAGCTGTTGATAATAATAGTATCCAATTGGAGCATGCCTCCTCCAATACAGAAGAAAATGTGATGGATTCTGAGACTAGGAAATTGCAGGGTAACCAAAGGTTTAGCCTTTATTCAATGTCCCAAATGGATTCTACTCCTGCCACCACATATGATGATGATATATCACTTGCATTGGAGTTGAGGAACTGTGAAAGCGATGGATTTGGCATTGTTGATGACGCCATGCACAAAAGACGTAATCAAACATTGGCTTCATCTCCAGAGACTGATTTACTAGATTACCATTTCACAGATTCAGGAAAGCAACAACACAGCAGGTTCAGCAATCCTCATCTGATGCATGAGTTTGTTGTATGA 1671 0.4267 MYSDQAFSSGSYAEMLSGGSLLPHNYAESVGGSQNEEQNMQCQGLSLSLGTVMPSAGSVPQFQYQYPDTGFLPLLNSFVPNMKGTMSIKDDETNLHKELRSAESMASVSSEGFHDMIKREGFYNQHPSICSNPCLQGSQGFSNIVQNSRYLKAAQELLDEVVSVRKALKQSGMEKQENFRDVGLDGSKGSDGKSTSQSVQISSGPNGSSANPSCELSSAERQNLLDKKTKLLSMLDEVDKRYRLYCHQMQIVVSSLDMVAGCGAAEPYTTLALRTISRHFRCLRDAISSQIQVAQRNLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEIGDSEIMKCNLSSENTLKGKRDGVQESNNKWEESQDNSIAVDNNSIQLEHASSNTEENVMDSETRKLQGNQRFSLYSMSQMDSTPATTYDDDISLALELRNCESDGFGIVDDAMHKRRNQTLASSPETDLLDYHFTDSGKQQHSRFSNPHLMHEFVV* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3557 556 Gene3D - 327 404 - -
Lja1g3557 556 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 513 - -
Lja1g3557 556 Pfam Homeobox KN domain 347 386 IPR008422 GO:0003677|GO:0006355
Lja1g3557 556 MobiDBLite consensus disorder prediction 189 217 - -
Lja1g3557 556 ProSiteProfiles 'Homeobox' domain profile. 327 390 IPR001356 GO:0003677
Lja1g3557 556 SMART HOX_1 330 394 IPR001356 GO:0003677
Lja1g3557 556 MobiDBLite consensus disorder prediction 176 217 - -
Lja1g3557 556 Pfam Associated with HOX 144 288 IPR006563 -
Lja1g3557 556 CDD homeodomain 330 391 IPR001356 GO:0003677
Lja1g3557 556 SUPERFAMILY Homeodomain-like 331 396 IPR009057 -
Lja1g3557 556 SMART prehox3 139 289 IPR006563 -
Lja1g3557 556 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3557 Lja-Chr1 44296144 44300782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3557 43 556 Homeobox Transcription Factor Family AT1G19700 43.820 3.02e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja1g3557 POX 4.6e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3557 - - gmx:100791641 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3557 1 44296144 44300782 Lja1g3557 1 44296144 44300782 ECH