Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3551 ATGATCAAGGGACAAGGTGAGCTACCCACCACGTTAGAACATGTGGTTAAAAAAAGTTTACCTATTGATAAGTTGAAGAAGACGGCTCAAGCGAGCTCCAGAAAGGGTTGCATGAGAGGTAAAGGAGGCCCTGAGAACGCGAGCTGCACCTACAAGGGTGTGAGACAGAGGACTTGGGGAAAATGGGTTGCTGAAATCCGTGAACCCAATCGCGGTGCACGCCTCTGGCTCGGAACATTTGAGACTTCTCATGATGCCGCCTTAGCCTATGATGCGGCCGCGCGTAAGCTTTATGGCTCAGATGCCAAGCTCAATCTACCAGAGCTAAGGAAATCATCTTCTCAGCATTGTCCACCATTTTCATCTGGGAGTACTCAGATGGAAAACCAGCCTCAAATTCTTCATCATTATCACAACATGGACATGGCCACATGTTCTGGTATCAATGCTAATCCAACAGTTTCCATGGTCTCTTCTCAGCAAGTTGGAGCTGGACCAATATACACTGACTCCATCGTGTCTCTTCCCTCGGATACCATGCCCATGCCTCATGAAATTGAAACATCCTATGCAAATGTGATGGAGAAAATGCCTCATGAAATGGAAACATCCTATGCAAATGTGATGGAGAAAGTGCCTCATGAAATGGAAAAATCCTATGCAAATGTGATGGAGAAAGAGGAGCAGTCCTATCCTGTTTTTGATAATTCAATGCCAATGAATGAGGACTTGCCAGTTTTTGATGATTCCATATGGGAAGAAGCTGCCATGTCCCTAGATTTTCCTATGATTAATCCAGAGGCTTCAACGGGGAACTTGGCAGATGATAGTGCCTGGGATCCTCTACAGACTCCATGGTACATGTAA 867 0.4567 MIKGQGELPTTLEHVVKKSLPIDKLKKTAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHDAALAYDAAARKLYGSDAKLNLPELRKSSSQHCPPFSSGSTQMENQPQILHHYHNMDMATCSGINANPTVSMVSSQQVGAGPIYTDSIVSLPSDTMPMPHEIETSYANVMEKMPHEMETSYANVMEKVPHEMEKSYANVMEKEEQSYPVFDNSMPMNEDLPVFDDSIWEEAAMSLDFPMINPEASTGNLADDSAWDPLQTPWYM* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3551 288 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Lja1g3551 288 CDD AP2 49 109 IPR001471 GO:0003700|GO:0006355
Lja1g3551 288 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Lja1g3551 288 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Lja1g3551 288 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Lja1g3551 288 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Lja1g3551 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 24 268 - -
Lja1g3551 288 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Lja1g3551 288 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Lja1g3551 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 24 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3551 Lja-Chr1 44235244 44238182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3551 23 112 AP2-EREBP Transcription Factor Family AT1G75490 82.222 8.53e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g3551 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3551 - - lja:Lj1g3v2139690.1 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3551 1 44235244 44238182 Lja1g3551 1 44235244 44238182 ECH
Lja5g3284 5 63293477 63294787 Lja1g3551 1 44235244 44238182 PCT