Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3543 ATGGAAAATGAACGTTATTGCCTTCCCGCGATGGATCTGCTGCGATCGGAGCCTATGCAACTGGTTCAATTGATCATTCCAATCGAAGCAGCTCATCGATCCATCTCTTACCTTGGCGAACTCGGTCTCTTCCAATTCAGAGATATGAATGCAGATAAAAGCCCTTTTCAACGGACTTACGCTGCTCAGATGAAAAGATGTGGGGAAATGGCACGCACGCTTCGGTTATTCAAGGAACAAATGACGAAGGCAGGTGTTTCACCCTCACCAACTCGGTCAACAAGAGACGGTTATGTAGATTTGGATAGTTTGGAGGGTAAACTTGCAGAACTTGAAGCTGAGCTACTCGAGATTAATGGAAACAATGAGAAGTTGCAGCACGCTTACAATGAGCTATTCGAGTATAAGCTTGTTCTGGAAAAGGTCGGTGAGTTTTTCTCTAAGGCACAAAATAGTGCTGTAGCTCACCAGAGGGGTCTTGAAGTCCAGACAATTGTTGAGGGATCTATTGATAGCCCATTATTACTGGAACAAGAGACAACATATGCGTCAAAGCAGATCAAACTGGGGTTTGTCAGTGGTCTTGTTCCTAGAGAAAAATCAATTCCTTTCGAAAGAATTTTATTTCGTGCTACTAGGGGAAACGTTTTTCTCAAGCAGGCTGTGATTGAACATCCTGTTCTTGATCCTATGTCAGGAGACAAGGTTCATAAAAATGTCTTTGTCGTATTTTATTCTGGAGAAGGAGTTAAAAGTAAAATTCAAAAGATATGTGATGCTTTTGGAGCAAATCGTTATCCTTTCTCAGATGACTTGAGTAAACAATTTCAGCTGATAACAGAGGTGTCAGTAAAACTTGAAGAATTAAAGGCAACCATTGATGTAGGTATGCTTCACCGGAGCACTTTGTTGCAGACAATTGGAAATCAATTTGAGCAGTGGAGCATTCTGTTGAAGAAGGAAAAATCCATTTACTACACTCTAAATATGCTAAGCATTAATGTCACGAGGAAATGTCTCCTTGCAGAAGGTTGGTGTCCGGTTTTTGCAGCTACTCAGATTCAAAAAGCATTGCAGCGGGCAACTATGGACTGTAACTCTCAAGTTGGAGCTATATTTCAGGTTTTACAAACAAAGGAATCACCGCCTACCTATTTTTGCACAAACAAGTTTACTTCTTCATTTCAAGAAATCGTAGATGCCTATGGAGTTGCCAGGTACCGGGAAGCAAATCCTGGAGTATACACAATCATCACATTTCCATTCCTTTTTGCTGTAATGTTTGGTGACTGGGGGCATGGTATATGCTTATTACTGGCATCTTTGTATTTCATAATCAAAGAAAAGAAGTTTTCTTCTCAGAAACTTGGAGACATATTAGAAATGGCTTTTGGGGGACGCTATATTATTATGTTGATGGCACTATTCTCAATCTACACCGGCTTGATATATAATGAATTCTTCTCAATTCCATTTGAACTATTTGGACCATCTGCCTATGGATGCCGTGAGTCTTCATGCAGGGATGCTTCTACAACAGGTTTAATGAAAGTGCGGGGCACTTACCCATTTGGTGTGGATCCTAAATGGCATGGTACTCGAAGTGAACTTCCATTTCTTAACTCTTTGAAAATGAAGATGTCAATTCTACTGGGAGTATCTCAGATGAATCTTGGAATCATGTTGAGTTACTATAATGGAAAATACTTTGGAAACGACATAGATGTCTGGTACCAGTTTGTTCCCCAGATGATATTCTTAAACAGCCTATTCGGCTACCTTTCACTCCTCATAATTGTAAAATGGTGGACTGGATCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGTCCAGCTGATGATTTGGGTGAAAACCAGCTCTTTGTTGGACAAAGGTTCCTTCAAATTGTGCTGCTACTGTTGGCACTCGTCGCTGTACCTTGGATGCTATTACCAAAGCCCTTTCTCCTGAAGAAGCAACATCTAGAAAGGCATCAAGGTGAATCTTACTCTTTGCTCTATGCTGGGGATGAACCTCTTGAATCAGAGTCAAATAGTACTCCCCGCGATCATGAGGAGTTTGATTTCAGCGAGGTTTTTGTGCACCAACTGATACATACAATAGAATTTGTGCTTGGAGCTGTGTCTAATACGGCTTCATACCTACGTTTATGGGCCCTCAGTCTAGCTCATTCAGAGTTATCAAGCGTTTTCTATGACAAAGTTCTACTTCTAGCATTGGGGTATAGCAACATCATTGTTCTCATTGTTGGCATTATTGTTTACATATGTGCTACTGTTGGTGTGTTACTGGTAATGGAAAGTCTGAGTGCTTTCTTGCATGCTTTGAGACTTCACTGGGTTGAGTTTCAGAACAAATTTTATCAGGGAGATGGTTACAAGTTCTTTCCATTTTCATTTACATCACTTAATAATGAGGATGAACTGTAG 2460 0.4057 MENERYCLPAMDLLRSEPMQLVQLIIPIEAAHRSISYLGELGLFQFRDMNADKSPFQRTYAAQMKRCGEMARTLRLFKEQMTKAGVSPSPTRSTRDGYVDLDSLEGKLAELEAELLEINGNNEKLQHAYNELFEYKLVLEKVGEFFSKAQNSAVAHQRGLEVQTIVEGSIDSPLLLEQETTYASKQIKLGFVSGLVPREKSIPFERILFRATRGNVFLKQAVIEHPVLDPMSGDKVHKNVFVVFYSGEGVKSKIQKICDAFGANRYPFSDDLSKQFQLITEVSVKLEELKATIDVGMLHRSTLLQTIGNQFEQWSILLKKEKSIYYTLNMLSINVTRKCLLAEGWCPVFAATQIQKALQRATMDCNSQVGAIFQVLQTKESPPTYFCTNKFTSSFQEIVDAYGVARYREANPGVYTIITFPFLFAVMFGDWGHGICLLLASLYFIIKEKKFSSQKLGDILEMAFGGRYIIMLMALFSIYTGLIYNEFFSIPFELFGPSAYGCRESSCRDASTTGLMKVRGTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIMLSYYNGKYFGNDIDVWYQFVPQMIFLNSLFGYLSLLIIVKWWTGSQADLYHVMIYMFLSPADDLGENQLFVGQRFLQIVLLLLALVAVPWMLLPKPFLLKKQHLERHQGESYSLLYAGDEPLESESNSTPRDHEEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLALGYSNIIVLIVGIIVYICATVGVLLVMESLSAFLHALRLHWVEFQNKFYQGDGYKFFPFSFTSLNNEDEL* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3543 819 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 11 819 - -
Lja1g3543 819 PANTHER VACUOLAR PROTON ATPASES 11 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lja1g3543 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
Lja1g3543 819 Pfam V-type ATPase 116kDa subunit family 37 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lja1g3543 819 Coils Coil 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3543 Lja-Chr1 44107594 44113191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3543 11 818 Primary Pumps ATPases(2) AT4G39080 71.941 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3543 K02154 - gmx:100805813 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3543 1 44107594 44113191 Lja1g3543 1 44107594 44113191 ECH