Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3541 ATGGCTGGTTTGTTCTCTCTAGGCCCACAAAACAAGTTAGAAGTTGAAAAAGAAGAGAGTAGCGTGTTGTGGTTCAGGAATGAAGAGATCTACAATAACAACAACAAGGGTTTTGAGATATGGCCACCGCAGCAGAATTTGTTGAACTACAACAACGAGGAAATCACGTCCTTGTGTGAAGCTGCTTCTAGGAGAAGATTTGGAATGATGATGAGTAGGCGTGGTGGTGGTGGTGGAGGCGTGAACTGTCAGGACTGTGGGAACCAAGCGAAGAAAGACTGTGCACATCTGAGATGCAGAACTTGCTGTAAGACCCGAGGGTTTCCGTGCCAAACGCATGTCAAGAGCACTTGGATTCCCGCTGCCAAACGCCGTGAACGACAGTTATTGCGCGGCGGAGAAGATAACAATGTTCCTAAACGTCATTCTTCAAATCCTCCATCCTCCACCACAGGGTTGGAAGCGGGGCAATTCCCTACTGAAGTGAACTCTACGGCGGTGTTTCGGTGTGTGAGAGTGAGCGGAGTGGAGTGTGCGGAGGAGCGGTGCGCGTATCAAACGTGTGTCAACATCGGAGGGCATGTTTTCAAAGGGATTCTCTATGATCAAGGTCCTGAAAGTTCTTACACTACTAGTACTGTAGTTGGTGAGGGTTCCTCCGCTGGTGGTGGTGGAGCTAAACAACTTGGCTTCGTAACTGCCACTAACACGGCCACAACCAGCGGAAACCCCTATTTTGACCCTTCTCTATACCCGGCTCCCTTAAATGCTTTCATGGCTGGTACGCATTTTTTCCCACCCTCAAGATCCTAA 813 0.492 MAGLFSLGPQNKLEVEKEESSVLWFRNEEIYNNNNKGFEIWPPQQNLLNYNNEEITSLCEAASRRRFGMMMSRRGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKTRGFPCQTHVKSTWIPAAKRRERQLLRGGEDNNVPKRHSSNPPSSTTGLEAGQFPTEVNSTAVFRCVRVSGVECAEERCAYQTCVNIGGHVFKGILYDQGPESSYTTSTVVGEGSSAGGGGAKQLGFVTATNTATTSGNPYFDPSLYPAPLNAFMAGTHFFPPSRS* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3541 270 Pfam Domain of unknown function (DUF702) 80 206 - -
Lja1g3541 270 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 267 - -
Lja1g3541 270 MobiDBLite consensus disorder prediction 130 156 - -
Lja1g3541 270 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 157 205 IPR006511 -
Lja1g3541 270 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 82 124 IPR006510 -
Lja1g3541 270 MobiDBLite consensus disorder prediction 139 156 - -
Lja1g3541 270 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 267 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3541 Lja-Chr1 44094336 44095354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3541 1 270 C2H2 Transcription Factor Family AT1G75520 43.923 2.19e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lja1g3541 DUF702 5.3e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3541 - - lja:Lj1g3v2140900.1 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3541 1 44094336 44095354 Lja1g3541 1 44094336 44095354 ECH
Lja5g3288 5 63370830 63373220 Lja1g3541 1 44094336 44095354 PCT