Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3539 ATGGCTAGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACTAACCGTCAGGTAACATACTCGAAACGACGGAACGGGCTTTTCAAGAAGGCAAACGAGCTCACCGTTCTGTGCGATGCCAAAGTTTCCATTATCATGTTCTCCAGCACTGGCAAGCTTCACGAGTATATTAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAGTATCAGATGACTGTAGGAGTTGATCTATGGAGCTCTCATTTTGAGAATATGCAAGAGAACTTGAAGAAACTGAAGGAGGTGAATAGGAATCTTCGTAAGGAGATTAGGCAGAGGGTGGGGGATTGTCTGAATGATCTGAGCATGGATGAACTCAGGCTTCTTGAGCAAGAAATGGACAACGCCGCCAAGGCTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAAAGAGAGGTGCACAATAGACTCCTCCGTGACCTGGATGCAAGAGCGGAAAATCCACCCTATGAATTGATGGACAATGGAGGGGAGTACGAATCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCTTACAACCTAGTCATCCTAATGCTCATAATAGCGGAGGAGGAGCAGGCTCTGACCTTACCACTTACCCCTTACTTTTCTAG 690 0.4536 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTVGVDLWSSHFENMQENLKKLKEVNRNLRKEIRQRVGDCLNDLSMDELRLLEQEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPYELMDNGGEYESVIGFSNLGPRMFALSLQPSHPNAHNSGGGAGSDLTTYPLLF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3539 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja1g3539 229 Pfam K-box region 83 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g3539 229 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g3539 229 Coils Coil 114 134 - -
Lja1g3539 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja1g3539 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja1g3539 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja1g3539 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Lja1g3539 229 Coils Coil 151 171 - -
Lja1g3539 229 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Lja1g3539 229 Coils Coil 84 107 - -
Lja1g3539 229 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Lja1g3539 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja1g3539 229 PANTHER APETALA3 1 226 - -
Lja1g3539 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja1g3539 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja1g3539 229 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3539 Lja-Chr1 44067907 44070761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3539 1 228 MADS-box Gene Family AT3G54340 57.328 7.21e-94 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja1g3539 K-box 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3539 K09264 - gmx:547720 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3539 1 44067907 44070761 Lja1g3539 1 44067907 44070761 ECH