Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3533 ATGGCAGCAACAACAACGGCTATATTTCTCACCATCATTGCCCTAGTTGCATACTTCACAACCACCATAACCTTCGCACAGAGCAACAACACTTCCCAGTCAGAGATTGAAGCTCTAACCACCTTCAAGCTCAGCCTCCACGACCCTCTTGGCTCCTTAGACGGATGGGACCCATCAACCAAACTCGCTCCCTGCGACTGGCGTGGCGTACTCTGTTTCAACAACCGAGTCCACGAGCTCCGCTTGCCTCGCCTCCAACTCACCGGCCAACTCTCCCTCTCCAACCTCCCGCACCTCCGTAAGCTCAGCCTCCACTCCAACAACTTCAACTCCACCATCCCCTCCTCCCTCTCCCGCTGCCTCTTCCTCCGTGCACTCTACCTCCACAACAACAAATTCTCCGGCACCGTTCCACCCTCTCTTCTCAACCTCACCAACCTCCAGATTCTCAACCTCGCCCACAATCTCCTCTCCGGCACCGTCCCCTCCCACCTCTCCGCCTCCCTCCGGTTCCTTGACCTCTCATCAAACTCATTCTCCGGCGACATTCCGGCGAACTTCTCCTCCAAATCCCAGCTCCAGCTCATCAATCTCTCTTACAACACCTTCACCGGTGAAATCCCTGTCACCATCGGAGCATTACAACGCCTGGAGTATCTCTGGCTTGACTCCAACCACCTACACGGAACGTTACCCTCTGCTCTCGCCAACTGCACCTCTCTGGTGCACCTGAGCGCAGTGGATAATTCCATCGGCGGGTTGGTCCCTTCCACCATTGGGACCATGCCGCAGCTTCAAGTGCTGTCACTTTCCATGAATCAGCTTTCAGGTTCGGTCCCCACGTCCCTGCTCTGTTCTGCAGGCAACAACAACAACTCAAGTCCCTCTCTGCGAATCGTTCAGCTCGGTTTTAACAAGCTCACAGGAATTTCAACACCGCCAGGTGGGAATTGTGTAACCCTTTTGGAGTTCTTGGACCTCAAACAGAACCACATTGCTAGTCCCCTGTTTTCCTTCACCAATGCAACGTCGTTGAGAGCTCTTGATCTTTCTGGAAACTCCTTTTCAGGGGCTTTACCTGCAGATATCGGAAGCCTCTTCAGGTTAGAAGAGTTGAGGCTTTCGGGTAATTCATTATCTGGTGAAGTTCCCAGTAGCATTGTGAATTGCAGGTTGTTGAAGGTTCTTGATCTTCAGGGGAACCGGTTTTCTGGTCCAGTTCCTTCATTTCTCGGAGAATTGAAGAACCTGAAAGAGTTATCTCTTGGTGGAAACTCTTTCACCGGTTCAATACCTTCAAGTTTTGGAACACTCTCGGAGCTTGAAACTCTGGATTTGAGTGAGAATAAGCTAACTGGGACTTTGCCAGTGGAGATCATGCAGTTACACAACATGAGTGATTTGAATCTCAGTAACAACAGATTCTCATCAGGCCAAGTGATTTCCTCTGATATTGGGAACTTGAAGGGTTTGCAGGGTCTTAATTTGAGTCAATGTGGATTTTCAGGGAAGGTTCCAGCTACTTTGGGCAATTTGATGAGACTAACAGTGTTGGATTTGAGCAAGCAAAACCTTTCAGGTGAGTTACCTGTTGAGCTTTATGGATTACCAAGCTTGCAAATTGTGGCACTTGAGGAAAACCATTTCAGTGGTTCAGTTCCTGAAGGTTTCAGCAGCTTAGTTAGTCTTCAGTATCTGAATCTCAGTTCAAATGCCTTTGTTGGAAGCATTCCAGCAACATATGGGTTTCTGAGTTCCTTAACTGTTCTCTCTTTGTCACACAATAGCATTTCTGGTTCAATCCCTCCAGAGATTGGTGGTTGTTCACAGCTTGAAGTTCTTCAGCTGAACTCAAATCACTTGGAAGCTAACATTCCTGTTGAAATCTCTCAGCTTTCCAAATTGAAAGAGCTTAACTTGGGACACAATAGGTTAAATGGTGAAATCCCAGATGAAATCTCAAAATGTTCAGCTTTGAGTACACTCATTTTGGATGCTAATCACTTCACAGGCCACATACCAGAATCCTTGTCAAAGTTATCAAACTTGACAGTGCTAAGCCTCTCTTCAAATTCACTCACAGGAGAAATTCCGGGTGGCTTTTCATTCAATTTTGGTTTGAAGCATTTGAATTTCTCCAACAATAATCTAGAAGGTGAAATTCCAGAAATGCTTGGTTCTAGAATCAACGACCCTTTACTGTTTGCAATGAACCAGAGGCTATGCGGAAAGCCTCTACATAAAGAATGTGCAAACGTGAGAAGGAGAAAGAGGAGAAGGATAATAATCTTCACCGCCGTGGCGGTGGCCGGTTTACTCCTCTTAGCACTATGTTGCTGTGGCTACATTTACAGCCTCATACGGTGGCGAAACAAGCTCCGGCGAGGCGTGACCGGCGAGAAGAAAAGAAGTCCTTCAGGGACAAGCTCAGGAGCTAGAGGAAGCAGCGAAAACGGAGGACCAAAGCTTGTAATGTTCAACAATAAAATCACATACGCAGAAACATTGGAAGCAACAAGAAACTTCGATGAGGAGAATGTGCTAAGCAGAGGAAAACATGGCCTGGTTTTCAAAGCAACCTTCAACGACGGCATTGTTCTCTCCATTCGCCGCCTCCCTGATAATTCCCTCATGGAAGAACCCACTTTCCGCAGAGAAGCAGAGTCACTAGGAAAAGTGAAGCACCGAAACTTAACAGTTCTTCGTGGTTACTATGCAGGACCACCCTCTGATATGCGTCTTCTGGTGTATGACTACATGCCGAATGGAAACCTCGGAACGCTTCTGCAGGAAGCTTCACAGCAAGATGGCCATGTCCTGAACTGGCCAATGCGGCATCTCATTGCGCTAGGAATCGCACGAGGGCTTTCGTTTCTGCACTCTGTTCCGATCGTTCATGGCGACGTGAAGCCTCAGAATGTTCTCTTCGACGCAGATTTCGAAGCCCATTTGTCTGAGTTCGGGTTAGACCGGGTGACTTCGCCGGCGGTGAACACGGCGGAGGAGTCGTCTTCGACGACTCCAGTTGGATCATTAGGCTACGCGGCGCCGGAAGCTGCGTTAACAGGGCAGGCGACGAAGGAGGGTGACGTGTACAGCTTCGGGATCGTGTTGTTGGAGATTCTGACGGGGAGGAAGGCGGTGATGTTTACGCATGATGAGGACATTGTGAAGTGGGTGAAGAAGCAGTTGCAGAGAGGGCAGATATCGGAGCTGTTGGAACCGGGGTTGCTTGAGCTGGATCCAGAGTCGTCGGAGTGGGAGGAGTTTTTGCTGGGGATTAAGGTGGCGCTGCTGTGTACGGCGCCGGATCCGCTTGATCGGCCGTCGATAAATGATGTTGTGTTCATGCTTGAAGGTTGTAGGGTCGGACCGGAGATTCCTTCCTCCGCTGATCCCACCACGCTGCCTTCCCCTGCTTGA 3423 0.492 MAATTTAIFLTIIALVAYFTTTITFAQSNNTSQSEIEALTTFKLSLHDPLGSLDGWDPSTKLAPCDWRGVLCFNNRVHELRLPRLQLTGQLSLSNLPHLRKLSLHSNNFNSTIPSSLSRCLFLRALYLHNNKFSGTVPPSLLNLTNLQILNLAHNLLSGTVPSHLSASLRFLDLSSNSFSGDIPANFSSKSQLQLINLSYNTFTGEIPVTIGALQRLEYLWLDSNHLHGTLPSALANCTSLVHLSAVDNSIGGLVPSTIGTMPQLQVLSLSMNQLSGSVPTSLLCSAGNNNNSSPSLRIVQLGFNKLTGISTPPGGNCVTLLEFLDLKQNHIASPLFSFTNATSLRALDLSGNSFSGALPADIGSLFRLEELRLSGNSLSGEVPSSIVNCRLLKVLDLQGNRFSGPVPSFLGELKNLKELSLGGNSFTGSIPSSFGTLSELETLDLSENKLTGTLPVEIMQLHNMSDLNLSNNRFSSGQVISSDIGNLKGLQGLNLSQCGFSGKVPATLGNLMRLTVLDLSKQNLSGELPVELYGLPSLQIVALEENHFSGSVPEGFSSLVSLQYLNLSSNAFVGSIPATYGFLSSLTVLSLSHNSISGSIPPEIGGCSQLEVLQLNSNHLEANIPVEISQLSKLKELNLGHNRLNGEIPDEISKCSALSTLILDANHFTGHIPESLSKLSNLTVLSLSSNSLTGEIPGGFSFNFGLKHLNFSNNNLEGEIPEMLGSRINDPLLFAMNQRLCGKPLHKECANVRRRKRRRIIIFTAVAVAGLLLLALCCCGYIYSLIRWRNKLRRGVTGEKKRSPSGTSSGARGSSENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGKHGLVFKATFNDGIVLSIRRLPDNSLMEEPTFRREAESLGKVKHRNLTVLRGYYAGPPSDMRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLSFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLDRVTSPAVNTAEESSSTTPVGSLGYAAPEAALTGQATKEGDVYSFGIVLLEILTGRKAVMFTHDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSINDVVFMLEGCRVGPEIPSSADPTTLPSPA* 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3533 1140 Gene3D Ribonuclease Inhibitor 91 288 IPR032675 -
Lja1g3533 1140 Gene3D Ribonuclease Inhibitor 479 753 IPR032675 -
Lja1g3533 1140 Gene3D Ribonuclease Inhibitor 289 478 IPR032675 -
Lja1g3533 1140 Gene3D Transferase(Phosphotransferase) domain 1 920 1126 - -
Lja1g3533 1140 PANTHER LRR RECEPTOR-LIKE KINASE 5 1136 - -
Lja1g3533 1140 MobiDBLite consensus disorder prediction 797 822 - -
Lja1g3533 1140 Pfam Leucine Rich Repeat 368 390 IPR001611 GO:0005515
Lja1g3533 1140 SMART LRR_typ_2 414 437 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 536 559 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 680 704 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 262 285 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 366 390 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 584 608 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 632 656 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 144 168 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 560 583 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 96 120 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 214 238 IPR003591 -
Lja1g3533 1140 SMART LRR_typ_2 438 462 IPR003591 -
Lja1g3533 1140 SUPERFAMILY L domain-like 32 284 - -
Lja1g3533 1140 SMART serkin_6 842 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3533 1140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 964 976 IPR008271 GO:0004672|GO:0006468
Lja1g3533 1140 Pfam Leucine rich repeat 658 717 IPR001611 GO:0005515
Lja1g3533 1140 Pfam Leucine rich repeat 514 572 IPR001611 GO:0005515
Lja1g3533 1140 Pfam Leucine rich repeat 168 227 IPR001611 GO:0005515
Lja1g3533 1140 Pfam Leucine rich repeat 586 645 IPR001611 GO:0005515
Lja1g3533 1140 Pfam Leucine rich repeat 416 475 IPR001611 GO:0005515
Lja1g3533 1140 SUPERFAMILY L domain-like 529 728 - -
Lja1g3533 1140 SUPERFAMILY L domain-like 292 598 - -
Lja1g3533 1140 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Lja1g3533 1140 Gene3D Phosphorylase Kinase; domain 1 813 919 - -
Lja1g3533 1140 PRINTS Leucine-rich repeat signature 441 454 - -
Lja1g3533 1140 PRINTS Leucine-rich repeat signature 680 693 - -
Lja1g3533 1140 SUPERFAMILY Protein kinase-like (PK-like) 821 1129 IPR011009 -
Lja1g3533 1140 ProSiteProfiles Protein kinase domain profile. 842 1127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3533 1140 Pfam Protein kinase domain 844 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3533 1140 Gene3D Ribonuclease Inhibitor 27 90 IPR032675 -
Lja1g3533 1140 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1136 - -
Lja1g3533 1140 MobiDBLite consensus disorder prediction 802 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3533 Lja-Chr1 44021228 44024685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3533 12 1140 Receptor kinase-like Gene Family AT1G75640 63.867 0.0 1326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Lja1g3533 Pkinase 9.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3533 - - gmx:100784917 1635.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3533 1 44021228 44024685 Lja1g3533 1 44021228 44024685 ECH