Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3526 ATGGATGATGCTGGGCATCATGAAAATGGAAGGCACAAAACAGATCCATATAAAACTGCTCAGGGACAGTGGTTGCTGCAGCATCAGCCTTCCATGAAGCAGATTATGGCAATTATGGCTGAAAGAGATGCAGCCCTTCAAGAAAGAAATCTGGCCCTATCTGAGAAAAAGACCGCACTTGCAGAGCGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAGCGAAATAATGCAATCATGGAACGAGATAATGCAATTGCAGCTCTTCAGTATCGAGATAACTCCTTCACTGGTGGCAATATACAAGCGTGTCCTCCAGGATGCCAAATTTCACGTGGTGTCAAGCATATACACCATCCTCAGCAACAGGTACACCATTTAACTAACATGGGTGAGGCTTCTTACAGCACAAGGGAAATGCACACATCTGATGCCCTCCCAGCTGTACCCATCTCCCCCGAGGCTGTGAAATCACGGCGTGTTAGACGACCAAAGGAAGCTAAGTCAATTTCACCCAACAAGAAGACTTCAAAAGCAGCCAAAAAAATCAAGAAGGAGAGTGAGGACTTGAATAAGATGATGTTTGGCAAGGGACATGACTGGAAGAGTGGTCAGGAAATGGTTAATGGAGGTGATGACCTTAACAGGCAGTTAGGGGTGTCAAAGGCTGATTGGAAAGGTCAAGACCTGGGGTTAAACCAAGTAGCATATGATGAGTCCACCATGCCTGCACCAGTATGCTCTTGTACTGGTGTCCTGAGGCAGTGCTACAAATGGGGCAATGGGGGTTGGCAGTCTTCCTGTTGCACAACAACCCTGTCAATGTATCCACTTCCAGCAGTGCCAAACAAGAGGCATGCTCGGGTAGGTGGTCGAAAGATGAGTGGCAGTGCTTTCAGTAAGCTGCTTAGTCGTCTTGCAGCCGAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAGGACCATTGGGCCAAACATGGTACTAATCGCTACATCACAATAAAGTAG 1014 0.4744 MDDAGHHENGRHKTDPYKTAQGQWLLQHQPSMKQIMAIMAERDAALQERNLALSEKKTALAERDMAFLQRDTAIAERNNAIMERDNAIAALQYRDNSFTGGNIQACPPGCQISRGVKHIHHPQQQVHHLTNMGEASYSTREMHTSDALPAVPISPEAVKSRRVRRPKEAKSISPNKKTSKAAKKIKKESEDLNKMMFGKGHDWKSGQEMVNGGDDLNRQLGVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3526 337 MobiDBLite consensus disorder prediction 159 187 - -
Lja1g3526 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 337 - -
Lja1g3526 337 PANTHER - 1 337 IPR010409 -
Lja1g3526 337 MobiDBLite consensus disorder prediction 159 174 - -
Lja1g3526 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
Lja1g3526 337 SMART GAGA_bind_2 1 337 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3526 Lja-Chr1 43947255 43949396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3526 65 337 BBR or BPC Transcription factor family AT5G42520 64.828 3.75e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Lja1g3526 GAGA_bind 4.2e-109 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3526 - - gmx:100783502 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3526 1 43947255 43949396 Lja1g3526 1 43947255 43949396 ECH