Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3521 ATGCGTGGATCGCATAGACGAGTTTCATGGGCTTCTGATTTTAATCTTTGTCAGGTTAGGTTATTCTTATCAGATGAATCTCCTTCACAAGTTGGGTTAAATTCTCAAGATCACCTCCAAGCAAAGACATCATTGCTGTTGCATCCAGGTGGAGCTGGTTCTGATGACTCTCTGCCTCCTGGATTTGAGGGAACTCATGCTTCAAGTCAGTTTGAGATTAATCTGTCCCAAATACCAGTTATTAGTTGGACTAGACCTCCAAAGATTGTGCTAAATCTCACATGGCAAGTGGTGGCTGGAGAAGAGAGCAAAGAGGTGGAGGATCAACATAAAAGGGAGCTGAGAGTACTTGAAGCTATTTATCCTCGCATTTCGTCCATTCCTTCAAACCCTGCTGTTTCAGTGGATGTGGAAAATTCCCATCACATTGATGGTCAAATTCCTTTGATACCAATTACTCCTATTGAAGACGATGATGCGGTTGCCGATACAGTATCTAATGTTTCACAGTCTCTTGAACAACCTACTGGTATATTGAAGGTTTCGAGCTCTGCTACAAATATGCACTTAGCTGGTGGTCTAGGGTCTGATGTAGCTGCTGCAGCTGCTGCTTTAACCAACATAGTCAAGAGCAATGAACGTGGAAATTTGATTGACCATGAATTACTTAAGAATATTCTCAGGAGTCCAGAAGTGATTGAGAAGTTGGTTAGAGATTATGGAGTTACTAATAATTCACAGTATGTACATAATGTGGGACCATCTTCAGCAGCTTTTTCACGTCCTCCTATTGCTACTAATCAAGGAGAAAATGCTTTGCTCTCATCGGTTACTTCTTCCTATATTCACCCAACTGGAGGCCAGGCAGCAAGCGTTTCTACCCAGTGGGTTCCTAGGCCTGTAGTGAATTCAGTTAGTGTTGCTTCCCCTGTTGAGGTCCCTTCAAAAAAAGATGCAAACTACTATAAGAGCTTAATTCAACAACATGGAGGAGACAAACAAGAAACATTTCCATACTCTAGCAGTAATCAGATCCAGCAGCCAGTAAACCAATATGAGACAGCATACAATCCTAGAGCGAAAGCGTTGAGACCAAAGATAATGAAGCCTTGTATCTTCTTTAACAGTTCTAGAGGGTGTAGGAATGGAGCTAACTGCTCATACCAGCATGATGCATCATTCCAGCAACGAGGGAGTACTGTGTCCGGGATACAAAGCTCAAAGAGAATGAAACTGGATAATGAGATTAGCAGTTAA 1257 0.4208 MRGSHRRVSWASDFNLCQVRLFLSDESPSQVGLNSQDHLQAKTSLLLHPGGAGSDDSLPPGFEGTHASSQFEINLSQIPVISWTRPPKIVLNLTWQVVAGEESKEVEDQHKRELRVLEAIYPRISSIPSNPAVSVDVENSHHIDGQIPLIPITPIEDDDAVADTVSNVSQSLEQPTGILKVSSSATNMHLAGGLGSDVAAAAAALTNIVKSNERGNLIDHELLKNILRSPEVIEKLVRDYGVTNNSQYVHNVGPSSAAFSRPPIATNQGENALLSSVTSSYIHPTGGQAASVSTQWVPRPVVNSVSVASPVEVPSKKDANYYKSLIQQHGGDKQETFPYSSSNQIQQPVNQYETAYNPRAKALRPKIMKPCIFFNSSRGCRNGANCSYQHDASFQQRGSTVSGIQSSKRMKLDNEISS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3521 418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 4 413 - -
Lja1g3521 418 MobiDBLite consensus disorder prediction 397 418 - -
Lja1g3521 418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 4 413 - -
Lja1g3521 418 ProSiteProfiles Zinc finger C3H1-type profile. 365 393 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3521 Lja-Chr1 43889316 43894820 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja1g3521 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3521 - - gmx:100783321 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3521 1 43889316 43894820 Lja1g3521 1 43889316 43894820 ECH