Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3516 ATGGACGAGGACCAAGAGATGGACCGATTCGGAATGGACAACGATTTCGAAGGCGGCGAATGGATTGCCGGCGAGTATTACTACCGGAAGCGCAAAGAGAAGCATGCACAAACCAAAGACGATGTGCTCTATGGAGTTTTTGCCGACTCCGACGATGATTATTCCAGCAGAAAACGCCGCAAAGATCGCAGTATGTCCAAAAAGCAAGACCTCACCAAACCGGTGAATTTTGTCTCTACAGGTACTTTTATGCCTAATGAGGAGATTGATAAGAATTCTAGAGAGAAGGATGAGGATGAGGGGGATGGTGATGTTAGTGATGGTAGGCCTGGTTTAGGTCTTGGTATGGGGGGATTAGGGTCTGCTAGCACATCAGGGTCTGGTTTAGGGTTTAATTCCGGTCGTGCTGCGGGCAATGGTTCTGATAGAAACAATGATGAGTCGGATGAGAATGATGATGAGAAGTTCTTGCCGACGGCGTTTGGGAAGATGATTAAGGAGGGGGCAATGAGGAGGGAAAGGGAGAGGCAGATGGAGAGAAAGGAGAAGAAGAGAGGGGACAGGCAGGGTGCTGCTGGTCAGGATGTATCGGGTGATGTGGGGAAATTCGAGAAGCATACTAAGGGAATAGGGATGAAGTTGTTGGAGAGGATGGGTTATAAAGGGGGTGGTCTTGGGAAGAATGAGCAGGGTATTTTGAAACCTATTGAGGCCAGATTGAGGGCTAAGAACTCTGGTCTTGGGTTTAATAACGAGACTCCGGCTGCGCCGTTGCCTGCTTTGCAGGTGGAGAGCCAGAGTGTGTCTGAAGCTGCCCAGCCGACGGTTGGTAGGACGAAAGAGAGGTCGTGGTCAAGGCAATCGAGGTCGAAGAAGAAGCAAAAGGAGGAAGAATATGTAACTGCCGAGCAGTTGTTGGCGAGCAAGCAAGAAGAAGATTCTGAAGTTGTTCACAGGATTTTAGATATGAGGGGACCGCAGGTTCGAGTGTATACAAATTTGTCTGACTTGAATGCTGAGGAGAAAGCAAAGGAAAGAGATGTCCCGATGCCAGAACTTCAGCATAACGTAGGGTTAATAGTTCGGTTGGCCGAGGCTGAGATCCAAGAGATTGATAGAGATTTGAGGAGAGAGAGGGAGACAGCACTTAGCTTGAAAAAAGAAAAGGAGAAGTTAGAAAGTGAGGCAGCATTTCAAAAGAAGCAGCTGGATGGTTTTGAGAAAATAATGGATGTGTTGGACCAAATCGGAGAAGAGAACACTGCAGGAACATTAACACTGGATTCCCTTGCCCAATGCTTTAGGGAGTTGCACCAGAAATATGCTGATAACTACAAGTTGTGTAATTTATCATGCATTGCTTGCTCGTATGCCCTGCCTTTGTTTATTAGAGTGTTCCAAGGATGGGATCCTCTTCGAAATCCATCCCATGGGCTGGAGTTGGTATCACAGTGGAAGACATTGCTTCAAGGAGAAGATTGTCTCGACATTTGGGATGATTCATCACCTTATGCTCAGTTGGTTTCAGAGGTTGTGTTGCCAGCTGTTAGAATATCTGGTATCAATACCTGGCAGGCACGGGATCCTGAGCCAATGCTGCGGTTTCTGGAGTCGTGGGAAAAGTTGCTTCCTTCTTCAGTTCTTGCAACTATATTGGACAATATAGTCATGCCAAAACTGTCAAGTGCTGTAGATACTTGGGAACCACATCGTGAGACCATTCCTATCCACACTTGGGTGCATCCATGGTTACCTCTGCTAGGGCACAAGTTGGAGGGTATCTACCAGGTGATTCGTTTCAAATTGAGTACTGTTCTTGGTGCGTGGCACCCAAGTGATGGTTCTGCGTATGCTATTCTGTCTCCTTGGAAGACTGTATTTGATTCTGTAAGTTGGGAACAACTTATGCTTCGTTTTATTGTACCAAAGTTGCAGCTTGTCTTGCAAGAATTCCAAGTGAACCCAGCAAATCAAAATCTTGATCACTTTTATTGGGTAATGAACTGGGCTTCAGCTATTCCAATTCATCTCATGGCTGATATGATGGAGAAATTCTTCTTTTCCAAGTGGCTTCAGGTTTTGTATCATTGGTTGTGCTCAAATCCCAACTTTGAAGAAGTTACAAAATGGTATTTGGGATGGAAAGAACTTATTCCAAAAGAACTTTTGGCAAATGAAAGTATTCGATTCCAGCTTAATCGCGGTCTTGGTATGATGAATCAGGCTGTTGAAGGTATGGAGGTGGTCCAACCCGGTTTAAAGGAGAATATAAGCTATCTTAGGGTACTTGAGCAAAGACAATTTGAGGCTCAGCAGAAAGCAGCCTATGCTCAACAACAAGCTGCTGCAAGCTTGGGCGGTGCTGTCAATGCTGATGGTGCGCATGAGTTGAGCTTGAAAGAAGTCATTGAGGCCCATGCTCAGCAACATGGTTTACTATTCAAGCTCAAACCTGGTAGAATGCACAATGGTCACCAGATATATGGGTTTGGTAATGTCAGCATAATAATAGACTCTCTAAATCAAAAGGTATATGCCCAAAATGAGGAAACATGGTCTTTAGAATCTCTTCAAGGATTGGTAGCGTTGCATCATAAATCCCTTGGTAAAAGACGCTGA 2619 0.4528 MDEDQEMDRFGMDNDFEGGEWIAGEYYYRKRKEKHAQTKDDVLYGVFADSDDDYSSRKRRKDRSMSKKQDLTKPVNFVSTGTFMPNEEIDKNSREKDEDEGDGDVSDGRPGLGLGMGGLGSASTSGSGLGFNSGRAAGNGSDRNNDESDENDDEKFLPTAFGKMIKEGAMRRERERQMERKEKKRGDRQGAAGQDVSGDVGKFEKHTKGIGMKLLERMGYKGGGLGKNEQGILKPIEARLRAKNSGLGFNNETPAAPLPALQVESQSVSEAAQPTVGRTKERSWSRQSRSKKKQKEEEYVTAEQLLASKQEEDSEVVHRILDMRGPQVRVYTNLSDLNAEEKAKERDVPMPELQHNVGLIVRLAEAEIQEIDRDLRRERETALSLKKEKEKLESEAAFQKKQLDGFEKIMDVLDQIGEENTAGTLTLDSLAQCFRELHQKYADNYKLCNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSQWKTLLQGEDCLDIWDDSSPYAQLVSEVVLPAVRISGINTWQARDPEPMLRFLESWEKLLPSSVLATILDNIVMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGIYQVIRFKLSTVLGAWHPSDGSAYAILSPWKTVFDSVSWEQLMLRFIVPKLQLVLQEFQVNPANQNLDHFYWVMNWASAIPIHLMADMMEKFFFSKWLQVLYHWLCSNPNFEEVTKWYLGWKELIPKELLANESIRFQLNRGLGMMNQAVEGMEVVQPGLKENISYLRVLEQRQFEAQQKAAYAQQQAAASLGGAVNADGAHELSLKEVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEETWSLESLQGLVALHHKSLGKRR* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3516 872 Pfam Tuftelin interacting protein N terminal 4 102 IPR022159 -
Lja1g3516 872 MobiDBLite consensus disorder prediction 51 69 - -
Lja1g3516 872 MobiDBLite consensus disorder prediction 70 87 - -
Lja1g3516 872 Pfam GC-rich sequence DNA-binding factor-like protein 427 694 IPR022783 -
Lja1g3516 872 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 7 858 IPR045211 GO:0000390
Lja1g3516 872 MobiDBLite consensus disorder prediction 120 141 - -
Lja1g3516 872 ProSiteProfiles G-patch domain profile. 207 252 IPR000467 GO:0003676
Lja1g3516 872 PANTHER TUFTELIN-INTERACTING PROTEIN 11 7 858 - -
Lja1g3516 872 Pfam G-patch domain 207 248 IPR000467 GO:0003676
Lja1g3516 872 SMART G-patch_5 205 250 IPR000467 GO:0003676
Lja1g3516 872 MobiDBLite consensus disorder prediction 263 296 - -
Lja1g3516 872 MobiDBLite consensus disorder prediction 39 208 - -
Lja1g3516 872 Coils Coil 361 409 - -
Lja1g3516 872 MobiDBLite consensus disorder prediction 154 190 - -
Lja1g3516 872 MobiDBLite consensus disorder prediction 263 281 - -
Lja1g3516 872 MobiDBLite consensus disorder prediction 88 106 - -
Lja1g3516 872 PIRSF TFIP11 1 867 IPR024933 -
Lja1g3516 872 Coils Coil 292 312 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3516 207 252 C2H2 Transcription Factor Family AT5G26610 47.826 4.84e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3516 K13103 - gmx:100781621 1367.83