Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3515 ATGGTTTCAGTTGAAGTAAAAACCAAACCTCTAGGAGAAGGAAGAGGTCATAATGTTGGAGGTGGGAGTGTAGCTGCTGAGATGAATCTGCTGAAGGAACATTGTGGTTCAAGGTTCCCAAAGGGTATAAATCCAGAGTTATGGCATGCTTGCGCAGGCCCTCTTGTATCCTTGCCTCAGTTAGGAAGTCTTGCTTATTACTTTCCTCAGGGACATATTGAGCAGGTAGCTGCTTCTACTCTAGGGATAGTAACCTCACAGATTCCAAACTACACCAATCTTCCATCTCAGTTGCTGTGCCAAGTCCAAAATGTCACACTTCATGCAGACAAAGAAACCGACGAAGTCTTTGCTCAAATGAGTCTTCAACCACTGGATTCTGAAAAAGATGTATTTCCTACATGTGATTTTGGGATAAAGCTCAGCAAGCATCCCACTGAGTTTTTCTGCAAAATTTTAACTGCTAGTGACACAAGCACACATGGTGGGTTCTCGGTACCACGCAGAGCAGCAGAAAAGCTCTTTCCTCCATTGGACTACACAGCTCAACCACCAACCCAGGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACATTCCGACATATATACCGCGGTCAGCCGAAGAGACACCTTCTCACAACTGGTTGGAGTTCGTTTGTGGGCTTAAAGAGGCTTAGAGCAGGCGACTCTGTCCTTTTTATCCGGGATGAGAAATCGCAGTTGCTAGTTGGTATTAGGCGTGCTAATCGCCAACAGACATCACTGCCATCATCAGTCCTTTCTGCCGATAGTATGCAAATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGCCCATTCACCATTTTCTACAATCCAAGAGCATGCCCTTCAGAATTTGTTATTCCACTGGCTAAATACAGAAAGGCTGTATATGAGACCCAGCTCTCAGTTGGTATGAGATTTGGAATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATACATGGGTACAATAGTCGGCATTAGTGACTTGGATCCTTTAAAATGGCCTGGTTCTAAGTGGCAAAATATTCAGGTGGAGTGGGATGAACCAGGGTGTACGGATAAGCAGAAAAGAGTTAGTTCGTGGGACATTGAGACTCCTGAAAGTCTTTTCATCTTTCAATCTTTGGCTTCAAGTCTTAAACGGCCATTGCAATCTGGATTGTTGGGTGCAGAAAACGGGAGGAACGCTTTAGTAAGAAGACCTTTTATGCCAGTTCCTGAAAATGGAACTGTGGGGCTCTTGAACACCATGCCAAATTTGTACTCTGAACAAATGATCAAAACTCTTATGAAACCTCAACTTGTTAACAATACTGGAAACTGTTTATGGGTCAGACAACAAGAATATGCTGCTATGAGAGGTCCCTTGGAAGAAGTGAGTACTATACCGCCAACAGCTTACCATAAAGTTCATCTTGCAAGTTCAATGAGCACACCACAAGTAAATCTACATTTTCAACCGAAACCAGACCAATCTAATGCCTTGAACTTGCATTCAAAGTTGAAAAGTGATGAACTTGAAAAGTTGCATCCTCCAACCAAAGTGGATAATCCTCTGTCTTCTGGAACAGTTTCTGATAAGTCAAAATCAGAATCTGAGGGGTTAAGTGTTGGTATCTTTGACTTCCCTTCCTTCGAAGGCTGCAACGTCGAGAAAATGGCATTCAATCCTCTTAGCCCCCAAAGCCTTGCAGAACAATTGGCATTCCTTAATCAAAACCAAACACCATCCGCGGTTGATATTCCTCAATCTGATTCTCATATTGTGAATGGTCCACTTCCTCAGCTAGACATGGATGAATGGATGAGGTATTCTTCTGAGAGCAACAATCTGAGTGAAATCTACAGCAGCATCAATATTGATGGTAGTAATAGTGTGAGTGTGGCTGATCCTTCTTTCACTTCAAGTGCTATCTTGGATGAGTGTTTCACATTGAAGGAAAGGAAGTATCAGAACCCGTCAGATTGCATGGTGAGCAACTTAAGTACGAGCCAAGATGTCCAGTCTCAGGTAACATCAGCAAGTCTAGCGGAATCAAATGCCTTTTCCCTACACGAGTTCCAGGACAACTCAGGTGTTGCATCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTACCGAATAATTCTTCATGGGTGCCAGTAGCTCCAAAGCCTGCACGTCGGCGTACCTATACCAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTCACCACATTCAAGAACTATGAGGAGCTGATCCACGCAATCGAAAGCATGTTTGGACTGGAGGGTCTGTTGAACGATTCTAGAGGTTCAGAATGGAAATTGGTATATGTGGATTATGAGAATGATGTTCTGCTTGTGGGGGATGATCCTTGGAAGGAATTTGTAGGTTGCGTTCGGTGCATCAGAATTCTATCACCTGCAGAAGTTCAGCAGATGAGTGAAGAGGGTATGGAGCTTCTAAACAGTGGTGCCTTGCAAGGGATGAATGGTTCAGGTGGCTGTAATTGA 2553 0.4375 MVSVEVKTKPLGEGRGHNVGGGSVAAEMNLLKEHCGSRFPKGINPELWHACAGPLVSLPQLGSLAYYFPQGHIEQVAASTLGIVTSQIPNYTNLPSQLLCQVQNVTLHADKETDEVFAQMSLQPLDSEKDVFPTCDFGIKLSKHPTEFFCKILTASDTSTHGGFSVPRRAAEKLFPPLDYTAQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSSFVGLKRLRAGDSVLFIRDEKSQLLVGIRRANRQQTSLPSSVLSADSMQIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVYETQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLKWPGSKWQNIQVEWDEPGCTDKQKRVSSWDIETPESLFIFQSLASSLKRPLQSGLLGAENGRNALVRRPFMPVPENGTVGLLNTMPNLYSEQMIKTLMKPQLVNNTGNCLWVRQQEYAAMRGPLEEVSTIPPTAYHKVHLASSMSTPQVNLHFQPKPDQSNALNLHSKLKSDELEKLHPPTKVDNPLSSGTVSDKSKSESEGLSVGIFDFPSFEGCNVEKMAFNPLSPQSLAEQLAFLNQNQTPSAVDIPQSDSHIVNGPLPQLDMDEWMRYSSESNNLSEIYSSINIDGSNSVSVADPSFTSSAILDECFTLKERKYQNPSDCMVSNLSTSQDVQSQVTSASLAESNAFSLHEFQDNSGVASSSHVDFDESSFLPNNSSWVPVAPKPARRRTYTKVQKAGSVGRSIDVTTFKNYEELIHAIESMFGLEGLLNDSRGSEWKLVYVDYENDVLLVGDDPWKEFVGCVRCIRILSPAEVQQMSEEGMELLNSGALQGMNGSGGCN* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3515 850 MobiDBLite consensus disorder prediction 531 545 - -
Lja1g3515 850 ProSiteProfiles PB1 domain profile. 739 823 IPR000270 GO:0005515
Lja1g3515 850 Gene3D - 735 828 - -
Lja1g3515 850 Gene3D - 313 386 - -
Lja1g3515 850 MobiDBLite consensus disorder prediction 520 545 - -
Lja1g3515 850 CDD B3_DNA 148 249 IPR003340 GO:0003677
Lja1g3515 850 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja1g3515 850 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Lja1g3515 850 SUPERFAMILY DNA-binding pseudobarrel domain 138 278 IPR015300 -
Lja1g3515 850 Pfam AUX/IAA family 736 825 IPR033389 -
Lja1g3515 850 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 843 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja1g3515 850 Gene3D - 146 250 IPR015300 -
Lja1g3515 850 SMART B3_2 149 251 IPR003340 GO:0003677
Lja1g3515 850 SUPERFAMILY CAD & PB1 domains 752 818 - -
Lja1g3515 850 PANTHER AUXIN RESPONSE FACTOR 5 35 843 - -
Lja1g3515 850 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3515 Lja-Chr1 43868540 43873823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3515 23 846 B3 DNA Binding Superfamily AT1G19850 56.852 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja1g3515 AUX_IAA 1.4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3515 K14486 - tcc:18591522 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3515 1 43868540 43873823 Lja1g3515 1 43868540 43873823 ECH