Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3513 ATGGCTTTAAGGAAACCAAGTAGGCTTCCTCAAACAGCACTCATCAAGCAAATCCTCAAGAGGTGCTCAAGTCTAGGGAAGAAACAAGGCTATGATGATGTCCCTAAAGGTCACTTTGTTGTGTATGTTGGAGAAAACAGGAGCAGGTACATTGTTCCAATTTCTTTCCTAAGCCGCCCTGAGTTCCAAACACTTCTCCATCAGGCAGAGGAAGAATATGGGTTTGATCATGACAAGGGTCTCACAATTCCATGTGAAGAAGAAGTTTTTGAGTCTCTCACATCCATGCTCAGATGA 297 0.4343 MALRKPSRLPQTALIKQILKRCSSLGKKQGYDDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEYGFDHDKGLTIPCEEEVFESLTSMLR* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3513 98 Pfam Auxin responsive protein 28 97 IPR003676 GO:0009733
Lja1g3513 98 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 98 - -
Lja1g3513 98 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3513 Lja-Chr1 43828413 43829062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3513 33 93 Calmodulin-binding Proteins AT3G43120 59.016 1.78e-20 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3513 K14488 - gmx:100778552 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3513 1 43828413 43829062 Lja2g0545 2 4903693 4904007 ECH
Lja1g3513 1 43828413 43829062 Lja4g3144 4 59485648 59485968 ECH
Lja1g3513 1 43828413 43829062 Lja1g3513 1 43828413 43829062 ECH