Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3505 ATGTCGACTTCCGGCGACGATCACAACCACTTCAGATTCCCTCACTTTCATCACAATCCTCCTCCTCCGTTTTCTATTCCTCCTCTCACCGTGAGTGAAAGATTTGAAATCAATAATTTCACGTCCGGCCCAATTAAGATTGAACCAGTTCCCAGTCATAGCAAAACAGTTAGCCTAACTCCTTCACTTCAAGCCGATCAAAGAGGAAAGCGTCACGGTAAATCAAAAGTCTCAAGAAATGCAAAATCAGGGACTAACGGTTCGAATGCAGAGTCTCCAAACTTGACTGCTGGTAACAACTGTCGGTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGCCAGTTTGATCCGGGATGCTGAGGATGGTACTCTTGATTTAAACAAAACTACTGAGATCTTGGAGGTTCAAAAAAGGAGAATCTATGACATCACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACGTCAAAGAACCATATACGGTGGAAGGGATGTGATGGACTTGGGCCGCGGGAACTGGATGATCAAGTTAATTGTCTAAAGGCTGAAATTGAAAGTCTATATGCAGAAGAATGCGAACTTGAGGACTGTATAAGGAAAAAAGAGGAGCTTATAAGAAACCTAGAGGAGAGAGAAGACTCTCAAAAGTACCTTTTTGTAAACAAGGAAGATATTCTAACCCTTCCATGCTTCCAGAATCAAGAACTTATCGCGATCAAGGCTCCAAAAGCTAGTGTCATTGAGGTCCCTGATCCTGACGAGGAATTAGGTTTCCGGCAAAGGCAGTACAAAATGACTGTCAGAAGTGCAACTGGACCAATACATTTGTACCACCTGAGGAAGCAAGAACGCAAGTTTGAGGATTGTGGTGCCAAGCAAATGAAATCAATAGATCCATCATTGAATAACGACCACTGCAGAATGGATGATCAGAAAACTCCTTCTGAGAGATTGAGTCCGCAGGGTTCAGAGGCATTTGGAATTCAAGAAATCACTCCCATGGATTTTGCAGTCGATGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCTGACAGAATTATGGGGTGGCAAAAGTACCTTCTAA 1098 0.4235 MSTSGDDHNHFRFPHFHHNPPPPFSIPPLTVSERFEINNFTSGPIKIEPVPSHSKTVSLTPSLQADQRGKRHGKSKVSRNAKSGTNGSNAESPNLTAGNNCRYDSSLGLLTKKFASLIRDAEDGTLDLNKTTEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIRKKEELIRNLEEREDSQKYLFVNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHLRKQERKFEDCGAKQMKSIDPSLNNDHCRMDDQKTPSERLSPQGSEAFGIQEITPMDFAVDDDYWFQSDPGVSLTELWGGKSTF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3505 365 MobiDBLite consensus disorder prediction 79 97 - -
Lja1g3505 365 SMART E2F_TDP_2 102 167 IPR003316 GO:0005667|GO:0006355
Lja1g3505 365 MobiDBLite consensus disorder prediction 300 325 - -
Lja1g3505 365 PANTHER TRANSCRIPTION FACTOR E2F 31 360 IPR015633 GO:0000978|GO:0006357
Lja1g3505 365 PANTHER TRANSCRIPTION FACTOR E2FC 31 360 - -
Lja1g3505 365 MobiDBLite consensus disorder prediction 42 97 - -
Lja1g3505 365 Pfam E2F/DP family winged-helix DNA-binding domain 104 167 IPR003316 GO:0005667|GO:0006355
Lja1g3505 365 SUPERFAMILY "Winged helix" DNA-binding domain 102 165 IPR036390 -
Lja1g3505 365 CDD E2F_DD 178 280 IPR032198 GO:0046983
Lja1g3505 365 Pfam E2F transcription factor CC-MB domain 183 281 IPR032198 GO:0046983
Lja1g3505 365 Gene3D - 174 285 - -
Lja1g3505 365 Gene3D - 96 169 IPR036388 -
Lja1g3505 365 Coils Coil 197 217 - -
Lja1g3505 365 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g3505 365 SUPERFAMILY E2F-DP heterodimerization region 178 283 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3505 Lja-Chr1 43638936 43643538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3505 70 359 E2F-DP Transcription Factor Family AT1G47870 51.379 1.37e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lja1g3505 E2F_CC-MB 4.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3505 K06620 - gmx:100797301 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3505 1 43638936 43643538 Lja1g3505 1 43638936 43643538 ECH