Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3490 ATGATGTGGTCCATTGCTGTAGGGTTTTCATCTAATGGTGAAGGCAAAACCAGTGCTGTTGCTGGGATTGTTTCCTCACCAACACTGAACCTGTCGGAGTCAATTGCTGAGGATATAAATGGTGAAGGTGTTGGTGTTGATAGTATGGACGATATTGCTAATGCTTTGTGGGATGGTATTGATGACATTGAGATGAAGAAGTTTCATTTTCCCAATCGCCAGGTAGCATATGAGTTCTACAACTTGTATGCTAGAGTGAAAGGCTTCTCAGTGCGGAAAAGCAAGGTTTTCAGAATCAAGAAAGGTGAAATTGTGCGGCAAGACTTTGTGTGTCACAAGGAGGGTTTCCGTGAAGAGAAAAACAGAATGAGGGAAAATCGTCAGCGTGAAACTAAGGTTGAGACCAGGTGTGGATGTTGTGCAAAAATGAGAATTCGTTTGGTGGTTTGTAAGGTTGAAGGCCATAACAAGACAACATGCCCCCAGAACAAACGAGCCAAAGTTAGTAATGAAGCAGCTGAAGTGACAATTGTACTGGAACGGCTGCTGCAGGTAGTGGATGTGTTAGAATTGTCAGTGATTGAAGTCAAAAGAAGGCAATTTCAAAGTGATTGA 615 0.426 MMWSIAVGFSSNGEGKTSAVAGIVSSPTLNLSESIAEDINGEGVGVDSMDDIANALWDGIDDIEMKKFHFPNRQVAYEFYNLYARVKGFSVRKSKVFRIKKGEIVRQDFVCHKEGFREEKNRMRENRQRETKVETRCGCCAKMRIRLVVCKVEGHNKTTCPQNKRAKVSNEAAEVTIVLERLLQVVDVLELSVIEVKRRQFQSD* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3490 204 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 64 144 - -
Lja1g3490 204 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 64 144 - -
Lja1g3490 204 Pfam FAR1 DNA-binding domain 78 147 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3490 Lja-Chr1 43492619 43495006 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g3490 FAR1 3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3490 - K17604 lja:Lj0g3v0299979.1 126.716