Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3480 ATGGTTATCGCAGCCGATTCTTCTTCCCCTAACACTACTACTGCTGCCGCCAACAACAGCCCGCGAAAAAACCTACCTTCTCCCTGGGCCCAGGTCGTTCGCTGTGCCGACTCAGAGCCACTCCACCACCAATCGCTGCCTTCATCATCTTCCTCTACCTCCTCCTTGTCCGCTGATTCCGATAGCTCCGATGCTGATAAGGCGAAGAACGCCGGTGCCCCGAAGAAACCCGCTTGGAAGATGCCACCCAGTGACGTCGCCGAGGTTAGTCCTGTAATGGGTGCTGTGTCTTGGCCCGCTTTATCTGAGGCCGCCAAACTTTCTGTGAAACCAACATCTGACTCCTCCACAACCGATGGATCACTCTCCACTACTCAGGGGCCTGTTACTCCACACTCCCCTCAGACACAAGCTAATAGCAATAGCAATGTGAAACCTAGTCCTGCAATGAACACTGATATGCCTAATAGACAAAGATCGACAAAGCAGGGAGGCAGCAATAGCAATGGGCCTGCTCCTGTGCGGGGTAACTTCACCAACACTGCCCCGAATCTTTCACCATCACCTCCCCTGCCACCACCACCACCTTTTCCTGTGCTTCAGATCCCTTCCAGTTCCTTTACCAATGGGGTTCCGGGCCCTTCCCCAAGAGATCCTTTCAGGAACAATAACTGGGATACAAGATCACCAGTTGGGGGTTTTGGGCCACCCATGAATGAACAAAGGAGTCCTTCCCGTAGGGGTAATTTTGGGCACCATCCACGAGGAGGTAATGGTTCACATCATAATAATTATGACAACAGGCGCGATCAGGAACGTTTAAATTATGCAAATTCTAGAGATGCCCGTGCACCCCAGCAGAGGATGTCTCCACGGGGATTGATGAGGTTCCCGCCAGCTAATGCTGCTCCTCCATTTATGGGGCCTCAACCACTGCAACCCTTTCTAAACCCTGCTGGGTTTCCTGAATTTTACTATTTTCCAACACTTCAATTGGAATCTTTTGGGCGTATGCCATTCTTCACGCATGCACCTCCTCCTGCAATGTTCTTCCCCGTTGCTGAAACTCCCTTGACCGATGTGATTATAAAGCAGATTGATTATTATTTTAGTGATACTAATTTAGTGAAAGACAACTATTTAAGGTCAAACATGGACGAACAGGGTTGGGTTCCAATTACTTTGATTGCAAACTTCCCTCGAGTTAAAAGTTTGACAAGCAACGTTGAGTTGATTCTGGATTCCTTGAAAACTTCCTCTGTCGTGGAAGTGCAGGGTGACAAGTTGAGGAAGCGTGATGATTGGATGAAGTGGCTGCCCTCCACCCAACGTGAGGTTGATTCTAGTTCAATGTCCACTGGTGAATCAAATTACAATAACATAGCTCGTGATTTTGAAAAAATAACTCTGAATGAAGCACTTCTAGATAAAGTTAATTTTGATCCTACCACAAATGGGGAGGCTATAGAATCTTCCGATCAGTCTCAATTCACAATTGGTGATGCTGCAAAGAGTTGCAATTAA 1524 0.4783 MVIAADSSSPNTTTAAANNSPRKNLPSPWAQVVRCADSEPLHHQSLPSSSSSTSSLSADSDSSDADKAKNAGAPKKPAWKMPPSDVAEVSPVMGAVSWPALSEAAKLSVKPTSDSSTTDGSLSTTQGPVTPHSPQTQANSNSNVKPSPAMNTDMPNRQRSTKQGGSNSNGPAPVRGNFTNTAPNLSPSPPLPPPPPFPVLQIPSSSFTNGVPGPSPRDPFRNNNWDTRSPVGGFGPPMNEQRSPSRRGNFGHHPRGGNGSHHNNYDNRRDQERLNYANSRDARAPQQRMSPRGLMRFPPANAAPPFMGPQPLQPFLNPAGFPEFYYFPTLQLESFGRMPFFTHAPPPAMFFPVAETPLTDVIIKQIDYYFSDTNLVKDNYLRSNMDEQGWVPITLIANFPRVKSLTSNVELILDSLKTSSVVEVQGDKLRKRDDWMKWLPSTQREVDSSSMSTGESNYNNIARDFEKITLNEALLDKVNFDPTTNGEAIESSDQSQFTIGDAAKSCN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3480 507 Pfam La domain 362 417 IPR006630 -
Lja1g3480 507 Gene3D - 352 441 IPR036388 -
Lja1g3480 507 MobiDBLite consensus disorder prediction 185 201 - -
Lja1g3480 507 MobiDBLite consensus disorder prediction 103 308 - -
Lja1g3480 507 SMART la 356 434 IPR006630 -
Lja1g3480 507 MobiDBLite consensus disorder prediction 108 184 - -
Lja1g3480 507 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g3480 507 MobiDBLite consensus disorder prediction 1 85 - -
Lja1g3480 507 PANTHER LA-RELATED PROTEIN 1B 6 484 - -
Lja1g3480 507 SUPERFAMILY "Winged helix" DNA-binding domain 349 441 IPR036390 -
Lja1g3480 507 MobiDBLite consensus disorder prediction 262 277 - -
Lja1g3480 507 ProSiteProfiles La-type HTH domain profile. 352 441 IPR006630 -
Lja1g3480 507 PANTHER LUPUS LA PROTEIN-RELATED 6 484 IPR045180 -
Lja1g3480 507 MobiDBLite consensus disorder prediction 42 61 - -
Lja1g3480 507 CDD LAM 362 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3480 Lja-Chr1 43391376 43394589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3480 K18757 - gmx:100775279 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3480 1 43391376 43394589 Lja1g3480 1 43391376 43394589 ECH
Lja5g3338 5 64851477 64855916 Lja1g3480 1 43391376 43394589 PCT