Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3474 ATGGGGCAGAAATTTTGGGTTGCTTTTATACTTTCTATACTTTCTATGGGCGGAATATTTTTCATGGTCTACTTTTGCTATTCTTGTTATGAATTCCATCGCCATCTCAGTCGTCTACCGAAGCCTATCAAAGGGTTGTCCTCTTTGCAGTTGGATAAGCTTCCCAGAATCACCGGCAAAGAGTTGGCCCGCGCCACCGAATGTGTTGTGTGCCTTGACATTATTAAGAGCGAGCAGCCAGCTCGACTGCTCCCCGGTTGTAACCATGCGTTTCATCTCCAGTGTATTGCCAAGTGGCTCTCAGAGAACTCGCATTGTCCAATTTGTAGAGCCAACCTTAGATCCTCAACTTCTCAAGAAAAATATTCTCTTCACATAGAAGTCATTTAG 390 0.4436 MGQKFWVAFILSILSMGGIFFMVYFCYSCYEFHRHLSRLPKPIKGLSSLQLDKLPRITGKELARATECVVCLDIIKSEQPARLLPGCNHAFHLQCIAKWLSENSHCPICRANLRSSTSQEKYSLHIEVI* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3474 129 SUPERFAMILY RING/U-box 67 119 - -
Lja1g3474 129 Pfam Ring finger domain 67 110 IPR001841 -
Lja1g3474 129 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 7 119 - -
Lja1g3474 129 ProSiteProfiles Zinc finger RING-type profile. 68 110 IPR001841 -
Lja1g3474 129 SMART ring_2 68 109 IPR001841 -
Lja1g3474 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 120 IPR013083 -
Lja1g3474 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 7 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3474 Lja-Chr1 43360723 43361112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3474 1 119 C3H Transcription Factor Family AT5G42200 42.636 4.38e-27 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3474 1 43360723 43361112 Lja1g3474 1 43360723 43361112 ECH
Lja5g3345 5 65130040 65131713 Lja1g3474 1 43360723 43361112 PCT