Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3462 ATGGGAGATACAGAGAGTTTCTGTAGCAGAGTTTTCGATTCTGGGTGGAATCAAAGTAGAAAGGATTGGCAGAAGGTTGAAGTGTACAGTGAGGTTCTTATTCGACTCAGGGAATTGAATGTCCCTGAGGCTTTGGTTCCTGGTTTTGAGGATGAACTTTGGGCGCATTTCCATCGACTTCCCACTAGGTATGCCTTGGATATGAATGTAGAGAGGGCTCAAGATGTTCTTATGCACAAAAGGTTACTGCACATGGCACGAAACCCGGCTACAACAACCGGACCTGCAGTTGAAGTCCGTCTTGTTCAGGTTCGTTCTGCTTCTGGTGTGCATTCTAGTAAATCCTTTCATTCAAACTCACGAACTAAAGTTTGTCCTCAGGATTCTGATATTCCAGGTGACATGAGCTTCCATTCTCCCCCGGCCTTTGGTTCATCAGCTAACATGGAACTCGCAGTTGGTGCGAGTCCATTACAAGTTCGGGATAAGGATAACTATTTGAATATTGTTACACCCTATGCTCGGCCTATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTCAGTCAGCTGACTTGCTTACTGTCTGAGACTGGGCTTGACATTCAAGAAGCACATGCTTTTTCCACATTGGATGGCTATTCATTGGATGTTTTTGCTGTTGGTGGTTGGCCAGTTGAGGAGACAGAGAAATTGAAACATGTGCTAGCTCAAAAACTCAAGAAGCAACCACAGTTGAAAGAAAATGGCAGTCTTCCTCTTGCAGAGCAAGGGAAAACCGAGATGGACTTTAGCTCTAGACATGCAAATTTACCTGATTGTGAAAATGACATCTCAAAAATTGATCCTAAGTGCTTGAGACTTGAAAAGAAAATTGCATCAGGACCTTTCAGTGACTTGTATAAAGGCACGTTCTGTAATCAAGATGTGGCTATCAAGGTCCTTAAGGATGAGAATTTGAACGATGATATAAGGAAGGAGTTTGCTCAGGAAGTCTACATCCTAAGTAAAGTTCAGCATAAGAATGTTGTCAAATTTGTTGGTGCTTGTACAAAGCCCCCAAACCTTAACCTTATCACAGAATATTTGTCAGGCGGAAGTATGTATGACTTTCTGCATTTACATAAGACTGTCCTTGCTCTTCCATCTTTGCTCAAAGTAGCGATTGATGTTTCCAAAGGAATGGAATATTTGCATCAGTGTGGTATCATACATCGGGACCTCAAAACGGCTAATCTCTTGATAGATGAGAATGGGGTAGTTAAGGTTGCTGATTTTGGTGTAGCCAAAGTGTACAATCAACCTGGTATTATGACTGCAGAAACTGGTACTTATCGGTGGATGGCTCCAGAGGTTATTGGACATAAACCATATGATCACAAAGCCGATGTCTTCAGCTTTGCCATTGTTCTTTGGGAGCTGCTAACAGGAAAGCTTCCTTATGACCATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGGTCCAGAAGGGTTTAAGGCCTAAAATTCCAAAGCATACTCATCCTAAGCTAGTGGAATTGCTTCACTGGTGCTGGCACCAAGAACCATCTTTGAGACCCAATTTCTCAGAAATTCTGGCATTTCTGCTGCACATGACCAACACGCTCTAA 1638 0.4267 MGDTESFCSRVFDSGWNQSRKDWQKVEVYSEVLIRLRELNVPEALVPGFEDELWAHFHRLPTRYALDMNVERAQDVLMHKRLLHMARNPATTTGPAVEVRLVQVRSASGVHSSKSFHSNSRTKVCPQDSDIPGDMSFHSPPAFGSSANMELAVGASPLQVRDKDNYLNIVTPYARPMHEITISTNDKPKLLSQLTCLLSETGLDIQEAHAFSTLDGYSLDVFAVGGWPVEETEKLKHVLAQKLKKQPQLKENGSLPLAEQGKTEMDFSSRHANLPDCENDISKIDPKCLRLEKKIASGPFSDLYKGTFCNQDVAIKVLKDENLNDDIRKEFAQEVYILSKVQHKNVVKFVGACTKPPNLNLITEYLSGGSMYDFLHLHKTVLALPSLLKVAIDVSKGMEYLHQCGIIHRDLKTANLLIDENGVVKVADFGVAKVYNQPGIMTAETGTYRWMAPEVIGHKPYDHKADVFSFAIVLWELLTGKLPYDHLSPLQAAVGVVQKGLRPKIPKHTHPKLVELLHWCWHQEPSLRPNFSEILAFLLHMTNTL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3462 545 ProSiteProfiles Protein kinase domain profile. 289 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3462 545 Gene3D Transferase(Phosphotransferase) domain 1 367 545 - -
Lja1g3462 545 SMART serkin_6 289 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3462 545 SUPERFAMILY Protein kinase-like (PK-like) 275 538 IPR011009 -
Lja1g3462 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Lja1g3462 545 Gene3D Phosphorylase Kinase; domain 1 279 365 - -
Lja1g3462 545 SUPERFAMILY ACT-like 177 243 IPR045865 -
Lja1g3462 545 CDD STKc_MAP3K-like 295 538 - -
Lja1g3462 545 Pfam Protein tyrosine and serine/threonine kinase 289 538 IPR001245 GO:0004672|GO:0006468
Lja1g3462 545 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 542 - -
Lja1g3462 545 PRINTS Tyrosine kinase catalytic domain signature 363 376 IPR001245 GO:0004672|GO:0006468
Lja1g3462 545 PRINTS Tyrosine kinase catalytic domain signature 400 418 IPR001245 GO:0004672|GO:0006468
Lja1g3462 545 PRINTS Tyrosine kinase catalytic domain signature 446 456 IPR001245 GO:0004672|GO:0006468
Lja1g3462 545 PRINTS Tyrosine kinase catalytic domain signature 465 487 IPR001245 GO:0004672|GO:0006468
Lja1g3462 545 PRINTS Tyrosine kinase catalytic domain signature 509 531 IPR001245 GO:0004672|GO:0006468
Lja1g3462 545 ProSiteProfiles ACT domain profile. 179 257 IPR002912 -
Lja1g3462 545 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 9 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3462 Lja-Chr1 43218523 43226286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3462 20 538 MAP Kinase Kinase Kinase AT4G35780 58.523 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja1g3462 PK_Tyr_Ser-Thr 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3462 - - aprc:113864606 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3462 1 43218523 43226286 Lja1g3462 1 43218523 43226286 ECH