Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3459 ATGGGTTCCCTCAGTGCCCTAGATGGACCTCTGCAATATCCATCTGCACGCAGAGACGACTCTGTCGTCGACGACTACCATGGCGTCAAGATCGCCGACCCTTATCGATGGCTTGAGGATCCTGATGCGGAAGAAGTGAAAGGGTTTGTAGAGAAACAGGTTCAATTGACGAATACTGTACTTGAAAAATGCGAGACTAGAACGAAGCTGAGTGAGAAAATCACCAAGCTATTTGATCATCCTCGTTATGAAGCTCCTTTCCGGCGAGCCGATAAGTACTTTTACTTCCACAACACCGGGCTTCAGCCACAAAGCGTCCTCTATGTGCAGGACAGTTTGGAGGGACAGGCAGAGGTTTTGCTTGATCCGAATGCATTAAGTGAAGACGGGACCGTTGCGCTGAGCACATTGTCCGTGAGCGAAGATGCGAAGTACTTGGCTTATGCGCTTAGTTCAAGTGGGAGTGATTGGGTGACTATAAAAGTAATGCATGTTGAGGACAAGAATGTTGTGCCTGATACTTTATCATGGGTCAAGTTTTCCGGTATTAGTTGGACACATGATAGCAAAGGTTTCTTTTATAGCCGCTATCCCACACCCAAAGATGGAGAAATAGTAGATGCTGGGACTGAGACGAACACTAACCTTTATCATGAGCTCTATTATCATTTTCTGGGTACAGATCAATCAGAAGATATTTTGTGCTGGAGAGATCCTGAAAACCCAAAATTTCTGTTTGGAGGAAGTGTTACTGATGATGGGAAGTATCTCCTCCTCCATATTGGAGAAGGGTGCGATCCAGTGAACAAACTTTATTACTGTGACTTTTCTAAACTTCCTAACGGATTGGAAAGCTTTCGGAATGAAAACGCCCTCCTCCCATTTGTCAAGCTTATTGATAAATTTGAGGCACAGTATGAAGTCATTGCAAATGATGATACTGTATTTACATTTTTAACTAATAAAGATGCTCCAAAATATAAACTAGTCCGAGTAGATTTGAAAGAACCAACTGCTTGGGCTGATGTTGTCCAGGAGTCTGAAAAAGATGTACTTGAATCGGCATGCGCTGTAAATGATAACCAATTGATATTGAGTTACTTGAGTGATGTGAAGAATGTTCTACAAGTACGAGACTTAAAAACAGGTTCTTTACTTCATCAATTACCAATTGACATTGGCACAGTTTCAGGAATTTCTGCACGGCGTGAAGATAGTGTGGTTTTCATTAGCTTTACTAGCTTTCTATCCCCTGGTATCATTTATCAGTGCAATCTGGGAACAGAGGTTCCTGATATGAAGATATTTCGTGAAATTGTTGTCCCTGGGTTTGATCGCTCTGAATTTCATGTTAATCAGGTTTTTGTCCCTAGTAAAGATGGTACCAAGATCCCAATGTTCATTGTTGCCAGAAGGGATATTATTTTGGATGGCTCACACCCTTGTTTGTTATATGGATATGGTGGTTTTAACATTAATATTACACCATCTTTTAGTGTTAGTCGCATTGTACTCGCAAAACATTTAGGTGTTGCTTACTGCATAGCAAATATTCGTGGTGGTGGAGAATATGGGGAGGAATGGCATAAAGCAGGCTCCCTTGCTAAAAAGCAGAATTGCTTTGATGACTTCATTTCTGCAGCTGAGTACCTTATATCTACTGGTTATACCCAACCCAGAAAGTTATGCATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGCGCTTGTATAAATCAGAGACCTGATCTCTTTGGCTGTGCACTAGCTCATGTTGGTGTTATGGATATGCTACGGTTCCACAAATTTACCATAGGTCATGCTTGGACCTCGGATTATGGTTGTTCAGATAAGGAGGAAGAGTTTCATTGGCTAATCAAGTACTCACCACTACACAATGTCCGGCGACCATGGGAGCAGCATCCTGAGCAGTCAATTCAGTACCCATCAACCATGTTGTTGACAGCTGATCATGATGATCGGGTTGTGCCACTGCACTCATTGAAGCTATTGGCGACCTTGCAGTATGTCCTTTGTAGTAGCTTGGAGAAAAGTCCCCAGACGAATCCTATAATTGGTCGCATTGACTGCAAGGCTGGACATGGAGCGGGTCGTCCAACACAGAAATTGATCGATGAAGCTGCTGACCGGTATGGTTTCATGGCTAAAATGTTACAAGTGCATTGGATTGAATAA 2196 0.4262 MGSLSALDGPLQYPSARRDDSVVDDYHGVKIADPYRWLEDPDAEEVKGFVEKQVQLTNTVLEKCETRTKLSEKITKLFDHPRYEAPFRRADKYFYFHNTGLQPQSVLYVQDSLEGQAEVLLDPNALSEDGTVALSTLSVSEDAKYLAYALSSSGSDWVTIKVMHVEDKNVVPDTLSWVKFSGISWTHDSKGFFYSRYPTPKDGEIVDAGTETNTNLYHELYYHFLGTDQSEDILCWRDPENPKFLFGGSVTDDGKYLLLHIGEGCDPVNKLYYCDFSKLPNGLESFRNENALLPFVKLIDKFEAQYEVIANDDTVFTFLTNKDAPKYKLVRVDLKEPTAWADVVQESEKDVLESACAVNDNQLILSYLSDVKNVLQVRDLKTGSLLHQLPIDIGTVSGISARREDSVVFISFTSFLSPGIIYQCNLGTEVPDMKIFREIVVPGFDRSEFHVNQVFVPSKDGTKIPMFIVARRDIILDGSHPCLLYGYGGFNINITPSFSVSRIVLAKHLGVAYCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEYLISTGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDKEEEFHWLIKYSPLHNVRRPWEQHPEQSIQYPSTMLLTADHDDRVVPLHSLKLLATLQYVLCSSLEKSPQTNPIIGRIDCKAGHGAGRPTQKLIDEAADRYGFMAKMLQVHWIE* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3459 731 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 508 532 IPR002470 GO:0004252|GO:0006508
Lja1g3459 731 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 536 555 IPR002470 GO:0004252|GO:0006508
Lja1g3459 731 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 648 670 IPR002470 GO:0004252|GO:0006508
Lja1g3459 731 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 481 499 IPR002470 GO:0004252|GO:0006508
Lja1g3459 731 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 566 586 IPR002470 GO:0004252|GO:0006508
Lja1g3459 731 PANTHER PROLYL OLIGOPEPTIDASE-LIKE PROTEIN 1 731 - -
Lja1g3459 731 SUPERFAMILY alpha/beta-Hydrolases 451 675 IPR029058 -
Lja1g3459 731 Gene3D alpha/beta hydrolase 22 721 IPR029058 -
Lja1g3459 731 SUPERFAMILY Peptidase/esterase 'gauge' domain 10 429 - -
Lja1g3459 731 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 14 429 IPR023302 GO:0004252
Lja1g3459 731 ProSitePatterns Prolyl endopeptidase family serine active site. 543 573 IPR002471 GO:0004252|GO:0006508
Lja1g3459 731 Gene3D - 81 440 - -
Lja1g3459 731 PANTHER PROLYL ENDOPEPTIDASE 1 731 - -
Lja1g3459 731 Pfam Prolyl oligopeptidase family 496 726 IPR001375 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3459 Lja-Chr1 43072521 43077874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3459 488 613 Carbohydrate Esterase AT5G36210 31.250 8.21e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3459 K01322 - gmx:100776544 1344.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3459 1 43072521 43077874 Lja1g3459 1 43072521 43077874 ECH
Lja5g3354 5 65210618 65216986 Lja1g3459 1 43072521 43077874 PCT