Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3453 ATGTACAAGGGAAGATTAGGAGGCAAAGCTCAGCTTAATGGATATGTTGAAACAAACCCATCTGGTCGATATGGACGTTTCAGGGACATTCTAGGCAAAGGAGCTATGAAGGTAGTGTATAAGGCATTTGATGAGGTCCTCGGGATAGAGGTGGCTTGGAACCAAGTCAAGCTGGGTGATGTGTTTCATTCACCAGACCAACTTCAACGCTTATATTCAGAGGTTCATCTCCTCAAGAATTTAGACCATGACTCCATCATGATCTTTCATGATTCTTGGATCGATGTCCGTGGTAGAACATTCAACTTCATCACTGAGTTGTTCACCTCTGGCACCCTACGAGAGTATAGAAAGAAATACCCTCAAGTTGATATCAGAGCAGTGAAGAACTGGGCACGCCAAATTCTTAGTGGTTTGGAGTATTTGCACAACCATGATCCTCCTGTGATACATAGGGACCTGAAGTGTGATAATATCTTTGTCAATGGCCATTTGGGGCAGGTCAAGATTGGTGACTTAGGCCTTGCAGCCATTCTTAGTGGCTCCAGACATGCTCATAGTGTCATAGGTACACCAGAATTTATGGCACCAGAATTGTATGAAGAGGAATACAATGAGCTAGTAGACATCTACTCATTTGGAATGTGTATGATAGAGTTGTTCACTTCAGAATTCCCATACAGCGAGTGCTCCAATCCTGCTCAAATATACAAGAAAGTTACTTCTGGTAAGCTACCAAATGCATTTTATAGAATCCACGATTTGGAAGCTCAAAGGTTTGTGGGAAAGTGTTTGGCAAATGTCTCTAAGAGGTTATCAGCAAAGGAGCTCTTGTTGGATACATTTTTAGCTACGGACCAACTTGACTCGCCATTGCCAAGCCCCACACTGCCAAGAAAACACACTCCCCCACTCAATTTCACTGCAGCAGTTTCCAAAAAGCAACCTTCAATGTGTGACCAAACAAAGACCACAAACATGACCATCACGGGGTCAATAAATGAAGAGGATAACACAATTTTCCTTAAAGTACAAATTTCGAACAAAAAAGGGCAAACAAGAAATATATACTTCCCATTTGACATCATAAATGACACTGCTATTGAGGTGGCAACGGAGATGGTTGACGAACTAGAAATCAGAGACTTGGAACCACTAGAAATTGCTGAAATGATAGAGGAGGAGATATCAATTTTAGTTCCTACATGGAAGGATTGGGGTACTTGTAAATATCAACAACAACACAGTTTTAGCTATGAAGAAGAGGATGATATCAGTAACCACCACCCTTTCTTGTCATCATCTTCTAGCTCTTCGTCTCACAGTCCTCTCCCAATATTTTCTTCCTCCTACAAGAACAACCACCTCTGTGAGAACCATCACCCTTTTGCTCGAGATTGGCATCAAGATGATCTATTTATGAATGATGATGAAAGCTCTGAAAGCTCAATGAACTCCTTGAAGTGTTTCAATTTCCACTACTGTGACTCAGGCAATGAAGAGAAACTTAATCCAATATTTGTAGTAGGAACAGAACACATTTCCTGCAGTACGCCAAAGGCCAATAACAAGTGCTCAGGATTCTGTCCTCGAGAAGAGGATGTTGACGTTGATAAACATTTTTGCAACATAAGAATTGATTCTCACTCTCGCAGGCATCATGGGCCAGGACATGGATTTCGAAAGTTGACAAGGATACACTCGTATGTAGATGTGAGGAGACAACAACATCAACAGCGATCTCTGATCGAGGAGATGCACAAAAGGAGGATGTTCAAGACGGTCGGTTCCATTGAGAATATTGGGTTTCAGAATCCAGAAGGAGGTGCATTTTGA 1836 0.4178 MYKGRLGGKAQLNGYVETNPSGRYGRFRDILGKGAMKVVYKAFDEVLGIEVAWNQVKLGDVFHSPDQLQRLYSEVHLLKNLDHDSIMIFHDSWIDVRGRTFNFITELFTSGTLREYRKKYPQVDIRAVKNWARQILSGLEYLHNHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILSGSRHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPNAFYRIHDLEAQRFVGKCLANVSKRLSAKELLLDTFLATDQLDSPLPSPTLPRKHTPPLNFTAAVSKKQPSMCDQTKTTNMTITGSINEEDNTIFLKVQISNKKGQTRNIYFPFDIINDTAIEVATEMVDELEIRDLEPLEIAEMIEEEISILVPTWKDWGTCKYQQQHSFSYEEEDDISNHHPFLSSSSSSSSHSPLPIFSSSYKNNHLCENHHPFARDWHQDDLFMNDDESSESSMNSLKCFNFHYCDSGNEEKLNPIFVVGTEHISCSTPKANNKCSGFCPREEDVDVDKHFCNIRIDSHSRRHHGPGHGFRKLTRIHSYVDVRRQQHQQRSLIEEMHKRRMFKTVGSIENIGFQNPEGGAF* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3453 611 PANTHER WNK KINASE 1 607 - -
Lja1g3453 611 Gene3D Transferase(Phosphotransferase) domain 1 108 288 - -
Lja1g3453 611 SUPERFAMILY Protein kinase-like (PK-like) 27 284 IPR011009 -
Lja1g3453 611 ProSiteProfiles Protein kinase domain profile. 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3453 611 Pfam Protein kinase domain 29 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3453 611 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Lja1g3453 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Lja1g3453 611 SMART serkin_6 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3453 611 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 607 - -
Lja1g3453 611 CDD STKc_WNK 23 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3453 Lja-Chr1 43041417 43046039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3453 14 424 MAP Kinase Kinase Kinase AT3G51630 68.689 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lja1g3453 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3453 K08867 - gmx:100816187 943.725