Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3451 ATGGCTTTCTCAACCAGTGCTTTGCTCTCCACAAACTTCCTAGGAACCAAGGTTCTGTTATCACCCCCAACCCCCAAAACAACCAAACAATCACTTCCTCTACCCTCATGTCTCAACACATGGTCTCAGAAACCCAAGAAAAACATCAATTTCTCCGAACCACTCAAATTGGCATCTTCACAAGCTGCCTTAGCAGCCCTTATCTTCTCCTCCGCGAGCTTCACCGCCCCTGAAGCTATTGCAGTAGCAGAAAACACCACCCCTCCTCCACCGGTAATCGAAGCACCGCAACCCAGCCAACTCAACGCCGCAAACTCCTCACCGTTTGCTCAGAATCTCTCCCTCACAGCACCCAAGCCGCAATCCCAGAACTCCTCTGACCTCCCCGATGGGACCCAGTGGAGATACAGCGAGTTCCTCAACGCTGTCAAGAAGGGCAAGGTCGAGCGCGTGAGATTCAGCAAGGACGGTTCCGCGCTTCAGCTCACCGCCGTCGATGGCCGCCGCGCCGGCGTTATTGTGCCAAACGACCCTGACCTCATCGACATCCTTGCAATGAACGGCGTCGATATTTCCGTCTCTGAAGGAGAATCAGGTAATGGGCTCTTCAGCATCATCGGGAACTTGCTGTTTCCGGTGCTTGCGTTTGCAGGGCTGTTCCTCCTCTTCCGTAGAGCTCAGGGCGGGCCTGGAGGACCCGGCGGGCTCGGAGGACCCATGGATTTCGGCAGGTCGAAGTCGAAGTTTCAGGAGGTTCCGGAAACAGGGGTGACCTTCGCCGACGTGGCCGGTGCTGATCAGGCGAAGCTGGAGTTGCAAGAGGTGGTTGATTTCTTGAAGAATCCTGACAAGTACACTGCGCTGGGTGCGAAGATTCCAAAAGGGTGTCTTCTGGTTGGGCCACCGGGAACAGGGAAGACCCTTCTGGCGAGAGCGGTGGCTGGTGAAGCCGGCACGCCGTTCTTCTCGTGCGCGGCTTCTGAGTTCGTGGAGCTCTTTGTGGGGGTTGGTGCGTCCAGGGTGAGGGATTTGTTTGAGAAGGCGAAATCGAAGGCACCGTGCATTGTGTTCATTGATGAGATTGATGCTGTTGGGAGGCAGAGAGGGGCGGGGCTCGGTGGTGGGAATGATGAGAGGGAGCAGACAATTAACCAGCTCTTGACAGAGATGGATGGCTTTTCTGGAAACTCTGGTGTCATTGTTTTGGCTGCCACTAACAGACCTGATGTTCTTGATTCAGCATTGCTAAGGCCTGGCCGATTCGATAGGCAAGTTACTGTGGACAGACCTGATGTTGCAGGAAGAGTCAAAATTCTTCAGGTGCATTCTAGAGGAAAAGCACTTGCCAAAGATGTTGATTTTGATAAGATTGCCAGGAGAACCCCAGGGTTCACAGGGGCTGATTTGCAGAATCTGATGAATGAAGCAGCTATTCTTGCAGCTAGGCGTGACCTCAAGGAGATTAGCAAGGATGAGATATCTGATGCGCTTGAGAGGATCATTGCTGGACCAGAAAAGAAGAATGCTGTTGTTTCAGAAGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTAGGTGCTTTAATGCCTGAATATGACCCTGTTGCCAAGATATCCATTATTCCTCGTGGTCAAGCTGGTGGTCTCACCTTTTTTGCTCCCAGCGAAGAGAGACTCGAGTCTGGATTATACAGTAGAAGCTACTTGGAAAATCAGATGGCAGTTGCACTTGGTGGAAGGGTTGCTGAAGAGGTGATTTTTGGCCAGGAGAATGTCACTACCGGAGCATCAAATGACTTTATGCAAGTTTCAAGAGTGGCGAGGCAGATGGTTGAGAGATTTGGGTTCAGCAAGAAAATTGGACAAATTGCCATTGGTGGAGCTGGTGGAAATCCATTCTTGGGTCAACAGATGTCAACACAAAAAGATTACTCCATGGCAACTGCAGATGTAGTGGATGCGGAAGTAAGGGAACTGGTGGAGACAGCCTATTCTAGGGCAACACAAATTATCACAACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAGAAAGAAACCGTGGATGGTGAAGAGTTCATGAGTCTATTTATTGATGGAAAAGCTGAATTATATGTTGCATAG 2145 0.5063 MAFSTSALLSTNFLGTKVLLSPPTPKTTKQSLPLPSCLNTWSQKPKKNINFSEPLKLASSQAALAALIFSSASFTAPEAIAVAENTTPPPPVIEAPQPSQLNAANSSPFAQNLSLTAPKPQSQNSSDLPDGTQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRAGVIVPNDPDLIDILAMNGVDISVSEGESGNGLFSIIGNLLFPVLAFAGLFLLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQIAIGGAGGNPFLGQQMSTQKDYSMATADVVDAEVRELVETAYSRATQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3451 714 SMART AAA_5 292 431 IPR003593 -
Lja1g3451 714 ProSitePatterns AAA-protein family signature. 399 417 IPR003960 GO:0005524|GO:0016887
Lja1g3451 714 Gene3D Peptidase M41 506 709 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja1g3451 714 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 58 706 - -
Lja1g3451 714 Gene3D - 128 199 - -
Lja1g3451 714 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 714 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lja1g3451 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 500 IPR027417 -
Lja1g3451 714 Pfam AAA+ lid domain 451 494 IPR041569 -
Lja1g3451 714 Pfam ATPase family associated with various cellular activities (AAA) 297 428 IPR003959 GO:0005524|GO:0016887
Lja1g3451 714 CDD AAA 263 428 - -
Lja1g3451 714 Gene3D - 247 429 IPR027417 -
Lja1g3451 714 MobiDBLite consensus disorder prediction 111 130 - -
Lja1g3451 714 MobiDBLite consensus disorder prediction 85 105 - -
Lja1g3451 714 SUPERFAMILY FtsH protease domain-like 510 704 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja1g3451 714 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 203 703 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lja1g3451 714 PANTHER METALLOPROTEASE M41 FTSH 58 706 - -
Lja1g3451 714 Pfam Peptidase family M41 510 703 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja1g3451 714 Gene3D - 430 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3451 Lja-Chr1 43029609 43032949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3451 253 705 Miscellaneous Gene Families AT5G53170 49.339 2.29e-135 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3451 K03798 - qsu:111999978 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3451 1 43029609 43032949 Lja1g3451 1 43029609 43032949 ECH
Lja5g3364 5 65754368 65756877 Lja1g3451 1 43029609 43032949 PCT