Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3450 ATGGGATGTTGCCAATCTTGCCCTTGCATCCCCAACCATTCAACTCCTCATCAACACAGCAACCTCGATAACAGTGTTGTTGCATCTTCCTCCAATGCCGACGTGCCGGCGTTCTCGGAATTCTCACTCTCCGACCTCAAATCCGCCACCAACAGCTTCAGCTCCGATCACATCGTCTCCGAGAGCGGCGAGAAAGCTTCCAATGTCGTCTACAGAGGTCGCCTCCACAACAGCCATAACCGTCGCTGGATTGCTGTTAAGCGCTTTTCCAAATTCGCCTGGCCTGATCCTAAGCAGTTCGCTGATGAAGCTTGGGGAGTGGGGAAATTACGACACCGTAGAGTTGCCAATTTGATTGGTTATTGCTGTGATGGGGATGAGAGGCTCTTAGTTGCAGAGTACATGCCCAACCACACTCTAGCCAAACATCTTTTCCACTGGGAAAATCGGACAATTGAGTGGAACATGCGGTTAAGAGTTGCCCTATTCATCAGTGAAGCATTAGACTATTGTAGTATCAAAGGTTATCCATTGTACCATGACTTGAATGCTTACAGAGTTTTATTTGATGAGAATGGTGATCCCCGACTTTCATGTTTTGGTTTGATTAAGAACAGCAGGGACGGGAAAAGTTATAGCACAAATCTTGCTTATACTCCTCCTGAGTATCTGAGAAATGGGAGGGTGACCCCAGAAAGTATCATTTTCAGCTTTGGGACTGTGTTATTGGATCTTCTAAGTGGCAAGCATATCCCTCCAACTCATGCTCTTGACATGATAAGAGGTAAAAATATTCAACTCCTCATGGATTCACATTTGGAGGGAAACTTTTCAACAGAAGAGGCTATTGTGGTTTTCGATCTTGCCTCAAAATGTTTGCAGTATGAACCTCGGGAGCGGCCCAAGACCAAGGACCTTGTTACAACACTTTTGGCACTACAAACTAAACAAGATGTTCCATCGTATGTTATGCTTGGAATTGCAAAGCATGAGGAAACACCTCCTACCCCACAGCATCCTCTATCTCCAATGGGTGATGCTTGTTCTCGCATGGACTTGACTGCAATTCATCAGATTTTGTTGATGACCAACTACAGAGATGACGAAGGGAATAATGAGTTATCCTTCCAAGAATGGACGCAGCAAACGAGGGATATGTTGGAGGCTAGAAAGCGCGGTGACTTGGCCTTTCGGGACAAGGATTTCAAAACTGCAATTGAGTGTTACTCTCAGTTCATTGGTGTTGGAACCATGATCTCCCCAACTGTCTATGCACGAAGAAGTCTTTGCCATCTCTTTTGCGACCAACCAGATGCTGCTCTCAGAGATGCAATGCAAGCTCAATGTGTCTATCCTGACTGGTCCGTGGCATTTTACATGCAGGCGGTTGCTCTTTCCAAATTAAACATGAATAAGGACGCAGCTGACATGTTAAGAGAGGCCTCTGCTCTGGAAGAGAAAGGGCAACCAAGAGGCAAATGA 1482 0.4588 MGCCQSCPCIPNHSTPHQHSNLDNSVVASSSNADVPAFSEFSLSDLKSATNSFSSDHIVSESGEKASNVVYRGRLHNSHNRRWIAVKRFSKFAWPDPKQFADEAWGVGKLRHRRVANLIGYCCDGDERLLVAEYMPNHTLAKHLFHWENRTIEWNMRLRVALFISEALDYCSIKGYPLYHDLNAYRVLFDENGDPRLSCFGLIKNSRDGKSYSTNLAYTPPEYLRNGRVTPESIIFSFGTVLLDLLSGKHIPPTHALDMIRGKNIQLLMDSHLEGNFSTEEAIVVFDLASKCLQYEPRERPKTKDLVTTLLALQTKQDVPSYVMLGIAKHEETPPTPQHPLSPMGDACSRMDLTAIHQILLMTNYRDDEGNNELSFQEWTQQTRDMLEARKRGDLAFRDKDFKTAIECYSQFIGVGTMISPTVYARRSLCHLFCDQPDAALRDAMQAQCVYPDWSVAFYMQAVALSKLNMNKDAADMLREASALEEKGQPRGK* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3450 493 Gene3D Phosphorylase Kinase; domain 1 27 134 - -
Lja1g3450 493 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Lja1g3450 493 ProSiteProfiles Protein kinase domain profile. 56 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3450 493 Gene3D Tetratricopeptide repeat domain 385 491 IPR011990 GO:0005515
Lja1g3450 493 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 489 IPR045845 GO:0004672|GO:0009742
Lja1g3450 493 SUPERFAMILY Protein kinase-like (PK-like) 37 318 IPR011009 -
Lja1g3450 493 Pfam Protein tyrosine and serine/threonine kinase 64 310 IPR001245 GO:0004672|GO:0006468
Lja1g3450 493 SUPERFAMILY TPR-like 387 485 IPR011990 GO:0005515
Lja1g3450 493 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 1 489 - -
Lja1g3450 493 Coils Coil 467 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3450 Lja-Chr1 43024623 43029257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3450 37 337 Glycoside Hydrolase AT3G07070 32.622 5.94e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lja1g3450 PK_Tyr_Ser-Thr 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3450 K14500 - tcc:18591677 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3450 1 43024623 43029257 Lja1g3450 1 43024623 43029257 ECH