Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3434 ATGGGGGATGGTGCTGTGACAACAACATCTGCAGCCATGATGGAAGCTCCAACAAATGAAACCTCGATGGATTTTGAATACATGAGTGATCTTCTCTTAGATGGTTGCTGGTTGGAAGCTTCTGCTGATGGATCAAATTTCTTGCTGCAGCAAAGTCCTCCTTTTTCAAGTCCTCTATTTGACCCTTCATTCTCATGGCCTGCTTTAGAAACCAATGAGCCAACCCATGTTGAGGATCAACATGAATCACAAGAAGCTCCTCTTGGCAACACCCAATTAGTGAGCCAGAGCCAGAACATGGTTAATGTTGTTGATGGTAGGTATAATAATCAGTCTGAAACTGAAACTCATTCAGTTGTAGAAGGTACTTCTGATGGGGTTAAGAGGTGGTGGATTGCACCTACATGTAGTCCTGGACTTGGACCTTCCATAATGGAGAAGCTGATAAGGGCCCTGAAATGGATCAAACAATTCAATTGGAACAAAGACATGCTCATACAAATTTGGGTGCCAGTTCCTCGAGGTGATAGGCCTATTCTATCAGCTAACAATCTTCCATTTTCACTTGATTCTGGGTCTGAAAACCTTGCAAGGTACCGAGAAATCTCTGAGGGGTTTCAGTTTTCAGCAGAGGAGGACTCCAAGGAGTTGGTGCCGGGATTGCCGGGTCGAGTTTTCCGGGACAAGGTTCCTGAGTGGACTCCTGATGTGAGGTTCTTCAGGAGTGATGAGTACCCGCGTGTCGAACATGCTCGAGAGTTTGACATATGTGGAACATTAGCAGTGCCAATCTTTGAGCAAGGTAGCAGGACTTGCTTGGGTGTTATTGAGGTTGTGATGACTACACAGCAGATCAATTATGTCCCTCAACTTGAGAGTGTTTGCAAGGCACTTGAGATTTTTACCTTGCAGGTTGTTGATCTTACAAGCTTGAAACATTCAAGTATTCAGAATGCAAAGGCACGTGACAAGTCGTATGAAGCTGCACTACCCGAGATTCAAGAGGTGCTGAGATCTGCATGTCATATGCACAAATTACCTTTAGCTCAAACTTGGGTCTCGTGCTTTCAACAAGGCAAAGATGGGTGCCGGCATTCTGAAGATAATTACTTACACTGCATATCTCCTGTGGAGCAAGCTTGCTATGTTGGTGATCCCTCTGTTAGGTTCTTTCATGAGGCTTGCATGGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCTGGGAAAGCTTTCATGATAAATCAACCATTCTTCTCAACCGACATAACTATGTTAAGCAAGACAGACTATCCACTGTCTCATCATGCCAGATTGTTCGGATTGCGCGCTGCAGTTGCCATACGCCTCCGAAGCATCTATAGTAGTGCAGATGACTATGTTCTAGAGTTCTTCTTGCCTGTGAATTGCAATGACAGTGAAGAACAGAAAAACATGCTTATATCATTGTCCATAATTATACAAAGGTGTTGCCGCAGCTTGCGGGTTATAACAGATAAGGAATTGGAGAGAACTAGCTCATCAGTTGAAGTGATGGCCCTTGAAGATAGTGGATTTGCTAGGACTGTGAAATGGTCAGAACCCCAACACATAACAAGTGTTGCCTCATTGGAACCTGAAGAAAAATCAAGTGAAACAGTGGGTGGAAAATTCTCTGATCTAAGGGAACATCAAGAAGATTCTATTTTAAAAGGAAACATTGAGTGTGATAGGGAGTGTTCTCCTTTTGTTGAAGGTAACTTATCAAGTGTGGGAATAAGTAAAACCGGAGAGAAAAGGCGAGCCAAAGCAGATAAAACTATCACTCTGGAAGTTCTTAGGCAATATTTTCCTGGAAGCCTAAAAGATGCTGCAAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGGGTATGCCGACAACATGGGATAAAGCGTTGGCCTTCTAGAAAGATCAAGAAGGTTGGTCACTCCTTACAGAAACTCCAACTTGTCATTGACTCAGTTCAAGGTGCCTCTGGTGCATCATTTAAAATTGATTCCTTCTATTCGAACTTCCCGGATCTAGCTTCTCCAAATTTATCAGGAGCCAGCCTGGTCTCAGCTCTGAATCAAAGTGAAAATCCAAACTCATTAAGCATACAACCTGATCTTGGCCCGTTGAGCCCAGAAGGTGCAACCAAATCACTCTCTTCCTCATGCAGCCAGGGTTCCCTTTCAAGCCATTCCTGTTCCAGCATGCCAGAGCAACAACCTCACACAAGTGATGTTGCTTGTAACAAAGATCCTGTGGTTGGTAAAGACTCTGCTGATGTTGTGTTGAAGAGGATCAGAAGTGAAGCAGAGCTTAAAAGCCACAGTGAAAATAAAGCAAAACTCTTCCCCAGATCTCTAAGCCAGGAAACACTTGGTGAACACACTAAAACCGAGTATCAAAGTTACTTATTAAAAACCTGTCACAAAGCAACTCCAAAGGAGGATGCTCACAGAGTAAAAGTTACATATGGAGATGAAAAAACCCGGTTTCGGATGCCAAAGAGTTGGAGCTATGAACATCTTTTGCAGGAAATTGCTAGGAGATTTAATGTGAGTGATATGAGCAAATTTGATGTTAAATATTTGGATGATGACTTAGAATGGGTATTACTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCTATCTTCTGAGAGTAGTACCATTAAACTTTGCATACAAGCTTCTAGTGGTATGAGAAGTTAA 2727 0.4261 MGDGAVTTTSAAMMEAPTNETSMDFEYMSDLLLDGCWLEASADGSNFLLQQSPPFSSPLFDPSFSWPALETNEPTHVEDQHESQEAPLGNTQLVSQSQNMVNVVDGRYNNQSETETHSVVEGTSDGVKRWWIAPTCSPGLGPSIMEKLIRALKWIKQFNWNKDMLIQIWVPVPRGDRPILSANNLPFSLDSGSENLARYREISEGFQFSAEEDSKELVPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVEHAREFDICGTLAVPIFEQGSRTCLGVIEVVMTTQQINYVPQLESVCKALEIFTLQVVDLTSLKHSSIQNAKARDKSYEAALPEIQEVLRSACHMHKLPLAQTWVSCFQQGKDGCRHSEDNYLHCISPVEQACYVGDPSVRFFHEACMEHHLLKGQGVAGKAFMINQPFFSTDITMLSKTDYPLSHHARLFGLRAAVAIRLRSIYSSADDYVLEFFLPVNCNDSEEQKNMLISLSIIIQRCCRSLRVITDKELERTSSSVEVMALEDSGFARTVKWSEPQHITSVASLEPEEKSSETVGGKFSDLREHQEDSILKGNIECDRECSPFVEGNLSSVGISKTGEKRRAKADKTITLEVLRQYFPGSLKDAAKNIGVCTTTLKRVCRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGASFKIDSFYSNFPDLASPNLSGASLVSALNQSENPNSLSIQPDLGPLSPEGATKSLSSSCSQGSLSSHSCSSMPEQQPHTSDVACNKDPVVGKDSADVVLKRIRSEAELKSHSENKAKLFPRSLSQETLGEHTKTEYQSYLLKTCHKATPKEDAHRVKVTYGDEKTRFRMPKSWSYEHLLQEIARRFNVSDMSKFDVKYLDDDLEWVLLTCDADLEECIDVCLSSESSTIKLCIQASSGMRS* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3434 908 PANTHER PROTEIN NLP8 20 905 IPR045012 GO:0003700
Lja1g3434 908 Pfam PB1 domain 821 901 IPR000270 GO:0005515
Lja1g3434 908 MobiDBLite consensus disorder prediction 717 749 - -
Lja1g3434 908 ProSiteProfiles RWP-RK domain profile. 586 667 IPR003035 -
Lja1g3434 908 ProSiteProfiles PB1 domain profile. 820 903 IPR000270 GO:0005515
Lja1g3434 908 PANTHER PROTEIN NLP4 20 905 - -
Lja1g3434 908 CDD PB1_NLP 821 902 IPR034891 -
Lja1g3434 908 Gene3D - 816 902 - -
Lja1g3434 908 MobiDBLite consensus disorder prediction 700 754 - -
Lja1g3434 908 SMART PB1_new 820 903 IPR000270 GO:0005515
Lja1g3434 908 SUPERFAMILY CAD & PB1 domains 813 905 - -
Lja1g3434 908 Pfam RWP-RK domain 599 647 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3434 Lja-Chr1 42839295 42844829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3434 23 904 NLP Transcription Factor Family AT1G20640 47.539 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja1g3434 PB1 1.7e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3434 - - gmx:100785135 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3434 1 42839295 42844829 Lja1g3434 1 42839295 42844829 ECH