Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3432 ATGGGAAATTGTTTGGCAAAACAAGGTGATGATGATCAGGTTAAGAAGAAGATTACTGCAGCCACCAATAAACCACGCACATCCCCTGCTACAGCACCCGTAGAATGTAGCATTATTCATGATGCTACTGCAGCACTAGAGGCACCTTGTACCGGGAAGATCGTGAAGCCGAATCTGAAAATGTTCCCATTGGATGATTTGAAAACTGCCACAAGAAACTTCAAACCAGACACGATTCTCGGAGAGGGTGGTTTTGGGCGTGTTTTCAAAGGATGGATCGATCCCAAGACCTTCAAGCCCTCAAGAGTTGGTGTTGGAATCCCTGTTGCTGTCAAGAAATCTAGCTCTGACAGCCTCCAAGGTTTAGAAGAATGGCAGAGTGAAGTGAAATTTTTGGGGAAGTTCTCTCATCCAAACCTGGTTAAACTACTAGGATACTGCTGGGAGGAAAGTTGTTTCTTGCTTGTGTATGAGTACATGCAGAAGGGGAGCTTGGAAAGCCACCTATTCAGAAAAGAAGGTCCAGAACCCCTTTCTTGGGATATAAGGCTCAAGATAGCCATAGGAGCTGCTAGAGGCCTTGCTTTCTTGCACAATTCAGAAAAATCTGTCATCTACAGAGATTTCAAGTCCTCCAACATTTTACTTGATAGGGATTTCAATGCAAAGCTTTCCGATTTTGGGTTGGCAAAGCTTGGCCCTATCAATGGAAGATCTCACATAACCACGCGGGTCATGGGCACCTATGGATATGCAGCCCCTGAGTACATGGCCACAGGTCATCTCTACGTGAAAAGTGACGTGTACGGATTTGGTGTGGTTCTGCTGGAAATATTAACGGGCCTAATAGCACTGGACAAAAACCGGCCCACGTATGAGCAGAATTTGGTGGGTTACGCGATGCCATCTCTAAGTGACAAAAAGAGTCTAAAAAAGATAATGGACCCAAAGATGGACCAACAGTATTCAATAAAAGCAGCACTTCTAATAGCTCAGCTTATACTCACATGTTTGGAATCTGACCCAAAGAACAGGCCTTCTATGGAGGATGTTTTGAGTACCTTAGAGAAGGCCCAAAGCATCAAACATAAGCCCAAAGTGAAGAAAGCACTAAATAAGGAGCAGCCCAAACCAATTCATTACAGCAATGGTTACTCCAAATCAAGAACTCACTCCCCTCAATAG 1185 0.4439 MGNCLAKQGDDDQVKKKITAATNKPRTSPATAPVECSIIHDATAALEAPCTGKIVKPNLKMFPLDDLKTATRNFKPDTILGEGGFGRVFKGWIDPKTFKPSRVGVGIPVAVKKSSSDSLQGLEEWQSEVKFLGKFSHPNLVKLLGYCWEESCFLLVYEYMQKGSLESHLFRKEGPEPLSWDIRLKIAIGAARGLAFLHNSEKSVIYRDFKSSNILLDRDFNAKLSDFGLAKLGPINGRSHITTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEILTGLIALDKNRPTYEQNLVGYAMPSLSDKKSLKKIMDPKMDQQYSIKAALLIAQLILTCLESDPKNRPSMEDVLSTLEKAQSIKHKPKVKKALNKEQPKPIHYSNGYSKSRTHSPQ* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3432 394 SUPERFAMILY Protein kinase-like (PK-like) 59 370 IPR011009 -
Lja1g3432 394 ProSiteProfiles Protein kinase domain profile. 74 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3432 394 Pfam Protein tyrosine and serine/threonine kinase 78 355 IPR001245 GO:0004672|GO:0006468
Lja1g3432 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Lja1g3432 394 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 35 375 - -
Lja1g3432 394 CDD STKc_IRAK 80 357 - -
Lja1g3432 394 PANTHER OS01G0588500 PROTEIN-RELATED 35 375 - -
Lja1g3432 394 MobiDBLite consensus disorder prediction 379 394 - -
Lja1g3432 394 MobiDBLite consensus disorder prediction 345 394 - -
Lja1g3432 394 ProSitePatterns Protein kinases ATP-binding region signature. 80 113 IPR017441 GO:0005524
Lja1g3432 394 Gene3D Transferase(Phosphotransferase) domain 1 160 379 - -
Lja1g3432 394 Gene3D Phosphorylase Kinase; domain 1 47 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3432 Lja-Chr1 42806155 42809467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3432 60 355 Glycoside Hydrolase AT3G07070 47.315 7.39e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja1g3432 PK_Tyr_Ser-Thr 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3432 - - aprc:113865973 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3432 1 42806155 42809467 Lja1g3432 1 42806155 42809467 ECH