Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3431 ATGAGTTGTTTTTCATGCCTGTTTTCTCGCCGGAAAGATGTAAGCAGGGTTGAAATTGATGACAATGCCACTCGATCTGGTTCTTCTTCAGGGAATGGGGGTGTGAATGCTGCTGCTGCTGCTACTGATGGTGAGAGGAAGAGGGAGACCAAGGGGAAGGGGAAGGGTGTGAGTAGTAGCAATGGTAGCAGCAATGGCAAGACTGCTGCGGCTAGTTTTGGCTTTCGCGAGCTTGCCGATGCAACAAGGAACTTTAAGGAGGCCAATTTGATTGGAGAAGGTGGTTTTGGAAAAGTTTACAAGGGTCGTCTCACGACTGGCGAGGCTGTTGCTGTAAAACAATTAAGTCATGATGGTCGTCAAGGTTTTCAGGAGTTTGTGATGGAGGTTCTTATGTTAAGCCTGCTGCACCATACCAATCTTGTTAGGTTAATTGGTTACTGCACTGATGGTGATCAGAGGCTTTTGGTTTATGAGTACATGCCCATGGGATCCTTGGAAGATCATCTTTTTGAGCTTAGCCATGACAAAGAGCCCCTAAATTGGAGTACTCGGATGAAGGTTGCTGTAGGAGCTGCTCGTGGCCTTGAGTATCTCCATTGTACAGCAGATCCTCCTGTTATCTATCGAGACTTGAAATCTGCAAACATCTTATTAGATAATGAATTCAACCCGAAACTGTCTGATTTTGGGCTTGCTAAGCTTGGACCTGTTGGAGACAACACTCATGTTTCAACCAGAGTGATGGGTACATATGGCTACTGTGCTCCAGAGTATGCTATGAGTGGCAAGTTAACTCTTAAATCTGATATCTACAGCTTTGGTGTGGTTTTGCTGGAGTTGCTCACTGGACGCCGAGCAATAGATACTAGCAGAAGACCTGGAGAGCAAAACTTAGTTTCATGGGCTCGCCCATATTTCAGTGACCGGAGAAGGTTTGGACACATGGTTGACCCTCTTCTGCAAGGACGCTTCCCATCGCGCTGTTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTTATCACCGACATTGTTGTTGCACTGGAATACCTAGCTTCTCAGGGTAGCCCTGAAGCCCATTATCTATATGGTGTGCAGCAACGACCTTCGAGGATGGAAAGAAATTAA 1158 0.4629 MSCFSCLFSRRKDVSRVEIDDNATRSGSSSGNGGVNAAAAATDGERKRETKGKGKGVSSSNGSSNGKTAAASFGFRELADATRNFKEANLIGEGGFGKVYKGRLTTGEAVAVKQLSHDGRQGFQEFVMEVLMLSLLHHTNLVRLIGYCTDGDQRLLVYEYMPMGSLEDHLFELSHDKEPLNWSTRMKVAVGAARGLEYLHCTADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELLTGRRAIDTSRRPGEQNLVSWARPYFSDRRRFGHMVDPLLQGRFPSRCLHQAIAITAMCLQEQPKFRPLITDIVVALEYLASQGSPEAHYLYGVQQRPSRMERN* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3431 385 PANTHER OS07G0668900 PROTEIN 1 365 - -
Lja1g3431 385 MobiDBLite consensus disorder prediction 21 36 - -
Lja1g3431 385 Pfam Protein kinase domain 86 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3431 385 PANTHER OS07G0668900 PROTEIN 1 365 - -
Lja1g3431 385 SMART serkin_6 85 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3431 385 SUPERFAMILY Protein kinase-like (PK-like) 65 359 IPR011009 -
Lja1g3431 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lja1g3431 385 Gene3D Transferase(Phosphotransferase) domain 1 161 372 - -
Lja1g3431 385 CDD STKc_IRAK 91 359 - -
Lja1g3431 385 Gene3D Phosphorylase Kinase; domain 1 57 160 - -
Lja1g3431 385 ProSiteProfiles Protein kinase domain profile. 85 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3431 385 ProSitePatterns Protein kinases ATP-binding region signature. 91 113 IPR017441 GO:0005524
Lja1g3431 385 MobiDBLite consensus disorder prediction 19 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3431 Lja-Chr1 42798182 42802216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3431 1 363 Glycoside Hydrolase AT3G07070 59.452 2.28e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lja1g3431 Pkinase 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3431 - - gmx:100796595 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3431 1 42798182 42802216 Lja1g3431 1 42798182 42802216 ECH