Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3429 ATGTTGCACTGTCTCAATACACCGGGAAGTCTTGCTGGGAACTGCTCCGACATGACGGTGTTGGAAAGGCAACGGATCAAGTTGCCACAAGGAAACGGGTTCAATTGTGTGTTCCCTTCTTCTTCTTCTTCTGATTCTGGTTCTTCACTTGCTGAGGTAGTTGCTCAGGCTCACTCAATCAAGTTTCATATGCCACCAGCTGGGCCTGAACCTTCTCCTGCTTCTGGGCCTGATTTGAATTCTGCAATTTCAAGGACTTTCAGCTGTCCACCTACTCTGGTAGAAGCTAAAGCCAATGAATTTTTCTCAATTAAGAAAGAGAGTTATAAGAAGAGGAAATCTGATAAGCCTCACAACCCCAAGATTGTTGCAGAAAATGATAGTAAAGACAAGAGGATCAAAGTGGATTCTGAAGATGGGGAATCCAATATCACAGGGAAGATCAGCATCAAGGATAACAAAACCGCCACAAAAAGTAAAAACAGGGGAACCTGTGCAAATAGTTCAAATTCAAAGGAAAATGAGGATCAAAAGCTAGACTACATTCATGTGCGAGCACGTCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTACAAGATTTGGTTCCCGGTTGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTACTGTCAACCCAGCCCTTGAATTCAATAGTGATGATCTGTTTGACAAAGTGGTGTTTCCTTCTTGTGATTCAACTTTTCCAGCTATAAACTTGACTAACCCTGCCACCTATCTTCAATTCAATTCACCACCACAGCAAATGGTTTCTTATGGAGGATTAGATACCGGGATGAACATGAACCCTTCCGATGTAGGGCTTCGAAGGACCATAAGTGCCCCGGTATCAGTACCTGAGACATTTATTGACTCCTCTTGTTACACTCAAATTCTACCCCCCACAACATGGGAAAGTGATTTTCAAAACCTTTACAACTTGAATTTTGATCAAGCACGAGCAACATCCTTTCCTTGA 1107 0.4192 MLHCLNTPGSLAGNCSDMTVLERQRIKLPQGNGFNCVFPSSSSSDSGSSLAEVVAQAHSIKFHMPPAGPEPSPASGPDLNSAISRTFSCPPTLVEAKANEFFSIKKESYKKRKSDKPHNPKIVAENDSKDKRIKVDSEDGESNITGKISIKDNKTATKSKNRGTCANSSNSKENEDQKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPALEFNSDDLFDKVVFPSCDSTFPAINLTNPATYLQFNSPPQQMVSYGGLDTGMNMNPSDVGLRRTISAPVSVPETFIDSSCYTQILPPTTWESDFQNLYNLNFDQARATSFP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3429 368 MobiDBLite consensus disorder prediction 108 141 - -
Lja1g3429 368 Pfam Helix-loop-helix DNA-binding domain 194 241 IPR011598 GO:0046983
Lja1g3429 368 Gene3D - 187 261 IPR036638 GO:0046983
Lja1g3429 368 MobiDBLite consensus disorder prediction 63 83 - -
Lja1g3429 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 360 IPR024097 GO:0006355
Lja1g3429 368 CDD bHLH_AtBPE_like 180 265 - -
Lja1g3429 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 240 IPR011598 GO:0046983
Lja1g3429 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 257 IPR036638 GO:0046983
Lja1g3429 368 MobiDBLite consensus disorder prediction 108 176 - -
Lja1g3429 368 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 41 360 - -
Lja1g3429 368 SMART finulus 196 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3429 Lja-Chr1 42747135 42749671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3429 9 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.612 5.08e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g3429 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3429 - - lja:Lj5g3v1428970.1 462.225