Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3426 ATGGCCTCAAGCTCCATGAGCAAACAAAAGGCTTGTGATTCTTCTACTTGGAGTCCAAAACAGAACAAGTTGTTTGAGAGAGCACTTGCAAAATATGACGAGGACACCCCTGAGCGGTGGCAAAATGTGTCCAAAGCAGTTGGTGGCAAATCAGTGGAGGAAGTCAAGAGACACTATGAGAGACTCTTGGAGGATCTCAAACACATTGAGTCTGGCCATGTTCCCTTTCCCACCTACAAATCCACAACAAGTGGCTAG 258 0.4651 MASSSMSKQKACDSSTWSPKQNKLFERALAKYDEDTPERWQNVSKAVGGKSVEEVKRHYERLLEDLKHIESGHVPFPTYKSTTSG* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3426 85 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Lja1g3426 85 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 83 IPR044636 GO:0003700
Lja1g3426 85 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Lja1g3426 85 CDD SANT 16 63 IPR001005 -
Lja1g3426 85 ProSiteProfiles SANT domain profile. 14 67 IPR017884 -
Lja1g3426 85 ProSiteProfiles Myb-like domain profile. 15 63 IPR001005 -
Lja1g3426 85 PANTHER PROTEIN RADIALIS-LIKE 3 1 83 - -
Lja1g3426 85 SMART sant 13 65 IPR001005 -
Lja1g3426 85 Gene3D - 9 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3426 Lja-Chr1 42725395 42725652 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g3426 Myb_DNA-binding 8.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3426 - - gmx:100785292 142.895