Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3424 ATGGCTTCTGCAGAAATTGAGTTCCGTTGCTTTGTTGGTGGACTCGCCTGGGCCACCGACAACGAAGCCCTCGAGAAAGCTTTCTCCCCCTACGGCGAAATCGTCGAATCGAAGGTTATCAATGATCGTGAAACTGGAAGGTCGAGGGGATTTGGATTTGTGACGTTCGCATCGGAGCAGGCGATGAAAGATGCGATTGAAGCGATGAACGGTCAGAATCTCGATGGCCGGAATATCACTGTGAATGAGGCTCAGTCCCGTGGAAGTAGCGGCGGAGGAGGGAGATATGGCGGTGGTGGTGGAGGATATGGAGGCGGAGGTGGTGGATATGGCGGTGGCGGTGGAGGATACAGCCGTGGTGGAGGTGGAGGTGGTTATGGAGGCGGTGGCCGACGTGAAGGTGGTGGAGGCGGTGGCTACAACCGCAACGGTGGAGGTGGAGGATATGGTGGTGGTGGCTATGGAGGTGGCGGTGGCGGTTATGGCGGTGGGAGAGACCGTGGGTACGGTGGTGGAGAGGGTGGTGGTTCCCGCTACTCAAGGGGTGGTGGCGATTCTGATGGAAACTGGAGGAGTTAA 579 0.5769 MASAEIEFRCFVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQAMKDAIEAMNGQNLDGRNITVNEAQSRGSSGGGGRYGGGGGGYGGGGGGYGGGGGGYSRGGGGGGYGGGGRREGGGGGGYNRNGGGGGYGGGGYGGGGGGYGGGRDRGYGGGEGGGSRYSRGGGDSDGNWRS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3424 192 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Lja1g3424 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lja1g3424 192 SMART rrm1_1 9 82 IPR000504 GO:0003723
Lja1g3424 192 MobiDBLite consensus disorder prediction 156 192 - -
Lja1g3424 192 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 131 - -
Lja1g3424 192 PANTHER GEO13361P1-RELATED 1 131 - -
Lja1g3424 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Lja1g3424 192 Gene3D - 2 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3424 Lja-Chr1 42696592 42697787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3424 2 98 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 1.14e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3424 - K13195 lja:Lj1g3v2296520.2 171.785