Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3421 ATGGCAAAAGCGAGAGACAGAACCGAAGATTTCAAAGATGCAGTGCGCCAGAGTGCTCGCTCTCTCGGCTACGATGAGGCTAAGTTGGCTTCAATTTTGGCATCTTTCATCATTCATAAACCTCCGCAAAGGTCTCCATTTTACAAAGCTGCATTAAAGACGCTTGAGAGTATTGGAGAATTGGAACAGTTTCTGTTGAAGCATAGAAAGGACTATACAGATCTTCACCGCACAACTGAACAAGAGAGAGATAGCATTGAGCAAGAAGTTAGTGCTTTTATTAAAACATGCCAAGAACAAATCGATGTTCTTAAGAATAGTATAAATAATGTAGAGGAAAATTCAAAAGGTTGGCTTGGTATTGCGACCGCAAAGGCTAATGCCGACACCATTGCCCACAAACATGGAGTGGTTCTAATTTTAAGTGAGAGACTCCATCCAGTTACAGCACAGTTTGATCAGCTCAGAGCTGTACGCTTCCAGGATGCTATTAATAGAGCGACACCACGAAGAAAACTTAGTCGTGTGACCCGGAAAGATTCTACTGAATCAGGTGATATGGAGCTCAGAGAACCTGATGAGTTACGCAGCGAGCCTTTAAGAGTCCAGCAGCAACTCTTGGATGATGAAACACGTGTCCTTCAGGTTGAATTGACTAATCTTCTAGACACAGTCCAAGAAACTGAAACGAAGATGGTGGAAATGTCTGCATTAAATCACCTCATGTCTACACATGTTCTGCAGCAAGCTCATCAAATTGAGTATCTGTATGAGCAGGCTGTTGAAGCTACTAAGAATGTAGAGTTTGGTAACAAAGAACTATCACAAGCCATTCAGCGTAATAGCAGCAGCAGGACATTTCTTTTACTCTTTCTATTTGTGCTTACTTTTTCGATCATCTTTCTTGATTGGTATAGTTAA 921 0.4137 MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGELEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNVEENSKGWLGIATAKANADTIAHKHGVVLILSERLHPVTAQFDQLRAVRFQDAINRATPRRKLSRVTRKDSTESGDMELREPDELRSEPLRVQQQLLDDETRVLQVELTNLLDTVQETETKMVEMSALNHLMSTHVLQQAHQIEYLYEQAVEATKNVEFGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLDWYS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3421 306 Coils Coil 69 89 - -
Lja1g3421 306 Pfam SNARE-complex protein Syntaxin-18 N-terminus 6 86 IPR019529 -
Lja1g3421 306 Coils Coil 94 114 - -
Lja1g3421 306 PANTHER SYNTAXIN-18 5 306 - -
Lja1g3421 306 SUPERFAMILY t-snare proteins 57 270 IPR010989 GO:0016020|GO:0016192
Lja1g3421 306 MobiDBLite consensus disorder prediction 170 194 - -
Lja1g3421 306 Gene3D - 210 303 - -
Lja1g3421 306 PANTHER SYNTAXIN-18 5 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3421 Lja-Chr1 42660427 42664641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3421 65 306 SNARE and Associated Proteins AT1G51740 74.797 8.05e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3421 K08492 - gmx:100778011 521.546