Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3418 ATGAATAGGGGAGTTGAAGTTCTCTCTCCAGCCTCCTATCTCCACAATTCCAATTGGTTGTTCCAGGAAAGTAAAGGAGCCAAATGGACTCCACAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTATTTCGATAAGGACACCCCGGATCGATGGTTGAGGGTGGCATCGATGATTCCAGGGAAAACTGTGGGTGATGTGATCAAACAGTACAAGGAACTTGAAGAGGATGTGTGTGTCATTGAAGCAGGTTTGGTCCCAGTTCCTGGGTATGGTGCTGATTCTTTCACATTGGAGTGGGCTAACAATCATCAGGGCTATGATATTGATGATGGGTTCAAGCAATTTTATAGTGTTGGTGGGAAAAGGGGTGCATCATGTACTCGGCCATCTGAACAGGAAAGGAAAAAAGGAGTGCCATGGACTGAAGAGGAACACAGGCTATTTCTGCTGGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAATTTTGTGACCACAAGAACACCCACTCAGGTTGCGAGTCATGCTCAGAAGTATTTCATCAGGCAGCTTACAGGAGGAAAGGATAAGAGAAGATCCAGTATCCATGATATCACAGTGGTCAATCTCCCCGAAACAAAATCCCCTCCGTCTTCTCCAGATCTCTCAGTGAAGTTTTCAAATCCACAGCAGAATCAGAATCCGTCTACCATGGTTAAACAGGAATATGACTGGAATTTACCAGACGAGGGCACGCCGATCGTTTTCCATTCAGCAAAGGGAAACATGTTCATGACACCATCGCGCGACATTTCATCACATGAATCTAAACCACAGGAGCACGATTTACTCAGAGGCACTCTCCAGGGGTGCCAGTTTATACCTTACGATACTGTTTTGCAAATGCCATGGATGCAACATCAATGA 921 0.4528 MNRGVEVLSPASYLHNSNWLFQESKGAKWTPQENKLFENALAYFDKDTPDRWLRVASMIPGKTVGDVIKQYKELEEDVCVIEAGLVPVPGYGADSFTLEWANNHQGYDIDDGFKQFYSVGGKRGASCTRPSEQERKKGVPWTEEEHRLFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITVVNLPETKSPPSSPDLSVKFSNPQQNQNPSTMVKQEYDWNLPDEGTPIVFHSAKGNMFMTPSRDISSHESKPQEHDLLRGTLQGCQFIPYDTVLQMPWMQHQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3418 306 SUPERFAMILY Homeodomain-like 134 188 IPR009057 -
Lja1g3418 306 Pfam Myb-like DNA-binding domain 140 185 IPR001005 -
Lja1g3418 306 Gene3D - 139 189 - -
Lja1g3418 306 Gene3D - 21 88 - -
Lja1g3418 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 265 IPR043363 -
Lja1g3418 306 CDD SANT 28 74 IPR001005 -
Lja1g3418 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 189 IPR017930 -
Lja1g3418 306 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
Lja1g3418 306 SMART sant 137 187 IPR001005 -
Lja1g3418 306 SMART sant 25 77 IPR001005 -
Lja1g3418 306 MobiDBLite consensus disorder prediction 208 234 - -
Lja1g3418 306 ProSiteProfiles SANT domain profile. 141 189 IPR017884 -
Lja1g3418 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 136 188 IPR006447 GO:0003677
Lja1g3418 306 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Lja1g3418 306 CDD SANT 140 185 IPR001005 -
Lja1g3418 306 PANTHER TRANSCRIPTION FACTOR DIVARICATA 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3418 Lja-Chr1 42623991 42626997 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g3418 Myb_DNA-binding 4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3418 - - var:108329798 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3418 1 42623991 42626997 Lja1g3418 1 42623991 42626997 ECH
Lja1g3418 1 42623991 42626997 Lja6g1144 6 33177948 33180494 ECH