Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3410 ATGAACCATCCTTGTGCAAACTCCAAGAGCCCATTGTTGCGAAATCTTAATGGTTTTCTTCTGTTATGCATGATCTCAAGCTTGCACTTGGTAACAACAGCAACATCAGAAGAAAATGAAACTGATCTCAGTGCTTTACTTGACTTCAAGAGTAAAATAGTTGGAGATCCATTCAACATTATGAGTTCTTGGAATAACTCCTTCCACCACTGCAATTGGACAGGAATCAGCTGCAACATTTCCAATGGAAGGGTCATGAACATGAACCTTGCAAAACTGAGATTAAAAGGTACTCTTACACCATCCATAGGAAACCTCACATTCCTCACCACACTGAACCTGTTTAGCAATAGCTTCCATGGTGAAATTCCTCAAGAGTTGGGTCGTTTACTCTACCTGCAAACTCTGGAATTCACCTTCAATGACTTTAGTGGGAACATTCCAAATAACCTCAGCCACTGTAGAGAACTATTGTCACTTGGTTTTTGGGATAACAATCTCACAGGAACAATCCCAAATTGGATCGGAAACATTTCTTCTCTGACCCGTCTTAGTTTTGCCTTGAACAATTTCCATGGAAGCATACCAAATGAGCTTGGTCTTTTATCAAGTTTAACACGACTAGTACTATATGGGAATTTTTTGTCTGGCACAGTTCCTTCTTCAATCTATAATCTTTCTTCCTTGTTCTATTTCACTCTCGCTCAAAACAATCTCCATGGAAGTTTACCATCTGATGTCGGATTTACTCTTCCTAACCTTGAAATATTTGCTGGTGGACTCAACAATTTCACAGGGAATGTTCCTGCATCATTGTTAAATGCTTCAAAACTAGTATTTCTTGACTTTTCTGTTAATGCCCTCACTGGATCACTGCCTAAGAACATAGGGGCCTTGAACCGGTTAACTAGACTTAGTTTTGAGCATAATAGGCTTGGAACTGGTAAAGCAGGAGATCTTAATTTTCTTGATTCTTTGGTCAATTGCACATCTCTACAGGTTCTACTCCTCGGAACGAATCGCTTTGGTGGAGTATTGCCTGATTCAATTGCTAATTTCTCAACCCAATTGTACAGATTTGCCTTTGGTTCCAATGAAATACAAGGAAATATACCTGCTGGGATTAGCAATCTTGTTAACTTGACCCTTTTATCATTGGAAGGAAACCACTTAACTGGTAGTGTTCCTGATGCAATAGGCAAGCTGCAAAATCTGCAAGAGTTGTATCTCAATGTCAACAACTTTTCAGGAAGAATCCCATCCTCTTTAGGAAATTTGTCTTCAATAATTAAACTCTTTCTGGAGCAGAACAATTTTGAAGGAAGCATACCTTCAAGTCTTGGAAAGTGCAAGGAGTTATTGTTGTTTAGCCTTTATCTTAACAAGCTTAGTGGCACAATACCAAAAGAAGTTTTTAACCTTTCTTTTCTATCAATATATTTGGATGTATCTTACAATGCTTTGTCAGGGTCACTTCCTGTTGAGGTGGGTAAGCTGCATAACCTTGGAGAGTTGGTGCTGACTGGGAACAACTTCTCAGGAGTCATTCCATCTTCTCTTGGCAGCTGCCTTAGCTTGGAAAGGCTGCATTTGCAGGGTAACTCTTTCCAGGGAAACATTCCTCAAAGTTTGAAGGGTTTGAGAGGTTTACTTGATATAGATCTTTCGCGCAATAACCTGTCAGGTAAGATTCCTGAGTTTCTTGGTGAGTTCACACAACTCAAGCGTCTTAATCTTGCTAACAACAGTTTTGAAGGTGAAATACCAATGAATGGAATCTTCAAGAATGTAACTTCCATTTCACTATATGGAAACAGCAAGCTCTGTGGTGGTGTCCCACAATTAAATTTTCCTTCATGCACTGTGAGGAAAACCTCTTCCTTAAGAAAACTTCTTTCACCTAAGGTGGCTATCCCTATAGCTATTGCACTTGTTCTTGTACTCTTGATATCATGTTTTCTTACCATCTTCCTCATTGTTAAAAGAGCAAAAAAGAGAACTTCATTATCAACTACCTCCTTGGAATTGGGATTTTCTTACTCAGAAATTGCAAATTGCACTGGTGGGTTCTCCCAGGATAACTTGGTTGGCTCAGGAAGTTTTGGTTCTGTATATAAAGGAACTCTTTCAGGTGATGGATCAATTGTTGCAGTGAAAGTGTTGAATCTTCAACAAAGAGGGGCTTCGAGAAGCTTCATTGATGAATGCCAAGTTCTGAGGAATACAAGGCACCGCAACCTTCTCAAGATCATAACTGCCATCTCAAGTGTTGATCGACAAGGTAATGAGTTCAAGGCTCTAGTCTTTGAGTTCATGTCTAATGGCAGTCTAGAAGATTGGTTGCATCCAATTAGTAACCTGCAATCACAGACCAAGACATTGACATTTATCCAGAGACTGAACATTGCAATTGACGTTGCTTGTGCCCTGGAATATCTGCACCACTTGGGTGAAACACCAATTGTTCATTGTGATATAAAGCCAAGCAATGTTCTTCTTGACAATAATTTTGTAGCCCATGTTGGTGACTTTGGCTTAGCTACATTTCTGTTTGAAGAACCAAGCAATTTGTCCAAACCATCTATCATGTCAGCTAGCCTAAGGGGCTCTATTGGATATGTCCCTCCAGAGTATGGCATGGGTGGAAAACCTTCTACGCTTGGAGACATCTACAGTTATGGAATACTATTACTAGAGATCTTCACAAGAAAAAGACCAACTGATGAAGCATTTGAAGGTGGCATGGGAATTCGCCAGTTTATAGCAATGGCTCTACCTATCAATGTCATGGATGAATTTGATGATGAAAGTGAAGAATTTGAAGAAAATGTAGAAGAAGAAAGAGCTATTAGGGGAAACTATGAGCTTGAAAAACCAACAGTTCATGCTAAAGGTTTGTTGGAGAAATGCATTGTATCAGTGTTTGAAATTGGAGTGTCTTGCTCAGAAACTGCTCCAGGTGAAAGGATGCCAATCACTGCAGTGGTAAAAAAACTGCATGCTATCAAGAACTCACTCATAATGAACTAG 3030 0.3957 MNHPCANSKSPLLRNLNGFLLLCMISSLHLVTTATSEENETDLSALLDFKSKIVGDPFNIMSSWNNSFHHCNWTGISCNISNGRVMNMNLAKLRLKGTLTPSIGNLTFLTTLNLFSNSFHGEIPQELGRLLYLQTLEFTFNDFSGNIPNNLSHCRELLSLGFWDNNLTGTIPNWIGNISSLTRLSFALNNFHGSIPNELGLLSSLTRLVLYGNFLSGTVPSSIYNLSSLFYFTLAQNNLHGSLPSDVGFTLPNLEIFAGGLNNFTGNVPASLLNASKLVFLDFSVNALTGSLPKNIGALNRLTRLSFEHNRLGTGKAGDLNFLDSLVNCTSLQVLLLGTNRFGGVLPDSIANFSTQLYRFAFGSNEIQGNIPAGISNLVNLTLLSLEGNHLTGSVPDAIGKLQNLQELYLNVNNFSGRIPSSLGNLSSIIKLFLEQNNFEGSIPSSLGKCKELLLFSLYLNKLSGTIPKEVFNLSFLSIYLDVSYNALSGSLPVEVGKLHNLGELVLTGNNFSGVIPSSLGSCLSLERLHLQGNSFQGNIPQSLKGLRGLLDIDLSRNNLSGKIPEFLGEFTQLKRLNLANNSFEGEIPMNGIFKNVTSISLYGNSKLCGGVPQLNFPSCTVRKTSSLRKLLSPKVAIPIAIALVLVLLISCFLTIFLIVKRAKKRTSLSTTSLELGFSYSEIANCTGGFSQDNLVGSGSFGSVYKGTLSGDGSIVAVKVLNLQQRGASRSFIDECQVLRNTRHRNLLKIITAISSVDRQGNEFKALVFEFMSNGSLEDWLHPISNLQSQTKTLTFIQRLNIAIDVACALEYLHHLGETPIVHCDIKPSNVLLDNNFVAHVGDFGLATFLFEEPSNLSKPSIMSASLRGSIGYVPPEYGMGGKPSTLGDIYSYGILLLEIFTRKRPTDEAFEGGMGIRQFIAMALPINVMDEFDDESEEFEENVEEERAIRGNYELEKPTVHAKGLLEKCIVSVFEIGVSCSETAPGERMPITAVVKKLHAIKNSLIMN* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3410 1009 SMART LRR_typ_2 202 226 IPR003591 -
Lja1g3410 1009 SMART LRR_typ_2 106 130 IPR003591 -
Lja1g3410 1009 SMART LRR_typ_2 378 401 IPR003591 -
Lja1g3410 1009 SMART LRR_typ_2 402 426 IPR003591 -
Lja1g3410 1009 SMART LRR_typ_2 571 596 IPR003591 -
Lja1g3410 1009 SMART LRR_typ_2 499 523 IPR003591 -
Lja1g3410 1009 Gene3D Phosphorylase Kinase; domain 1 672 771 - -
Lja1g3410 1009 SUPERFAMILY L domain-like 355 610 - -
Lja1g3410 1009 Gene3D Ribonuclease Inhibitor 152 245 IPR032675 -
Lja1g3410 1009 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 37 165 - -
Lja1g3410 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Lja1g3410 1009 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 37 165 - -
Lja1g3410 1009 Gene3D Ribonuclease Inhibitor 41 151 IPR032675 -
Lja1g3410 1009 SMART serkin_6 690 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3410 1009 SUPERFAMILY RNI-like 87 416 - -
Lja1g3410 1009 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Lja1g3410 1009 Gene3D Transferase(Phosphotransferase) domain 1 772 1008 - -
Lja1g3410 1009 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 160 1003 - -
Lja1g3410 1009 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 160 1003 - -
Lja1g3410 1009 SUPERFAMILY Protein kinase-like (PK-like) 667 999 IPR011009 -
Lja1g3410 1009 Pfam Leucine rich repeat 525 583 IPR001611 GO:0005515
Lja1g3410 1009 Coils Coil 930 957 - -
Lja1g3410 1009 ProSiteProfiles Protein kinase domain profile. 690 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3410 1009 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Lja1g3410 1009 Gene3D Ribonuclease Inhibitor 321 621 IPR032675 -
Lja1g3410 1009 Gene3D Ribonuclease Inhibitor 246 320 IPR032675 -
Lja1g3410 1009 Pfam Leucine Rich Repeat 404 426 IPR001611 GO:0005515
Lja1g3410 1009 Pfam Protein kinase domain 691 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3410 Lja-Chr1 42487702 42497043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3410 39 1003 Receptor kinase-like Gene Family AT3G47570 43.856 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja1g3410 Pkinase 4.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3410 - - lja:Lj1g3v2312950.1 1730.3